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MetalPDB specifications

Information


Unique identifier OMICS_07654
Name MetalPDB
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2
Maintained Yes

Maintainer


  • person_outline Claudia Andreini

Publications for MetalPDB

MetalPDB citations

 (3)
library_books

To what extent do structural changes in catalytic metal sites affect enzyme function?

2018
PMCID: 5760197
PMID: 29161638
DOI: 10.1016/j.jinorgbio.2017.11.002

[…] manual examination of functional and structural details extracted from various sources, which typically included: the publications describing the structures deposited in the PDB (Protein Data Bank) ; MetalPDB ; Metal-MACiE ; PDBSprotEC ; BRENDA . To compare metal-binding sites of metalloenzymes with known structure we used the MetalS2 tool (Metal Sites Superposition tool) ; to identify metal-bindi […]

library_books

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics

2016
Int J Mol Sci
PMCID: 4881497
PMID: 27153067
DOI: 10.3390/ijms17050671

[…] To enable analyses of the kind mentioned above, we created the MetalPDB resource [], a database of MFSs derived from the structures deposited in the PDB. MetalPDB is available at http://metalweb.cerm.unifi.it. The crucial difference between databases of metal-bin […]

library_books

Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites

2015
Sci Rep
PMCID: 4377587
PMID: 25820752
DOI: 10.1038/srep09486

[…] Ss to get clustered. (i) The first reason is that sites with very high structural similarity and found in different metalloprotein families are identified. (ii) The second cause becomes relevant when MetalPDB did not group metalloproteins of the same family, typically because of missing domain information, and consequently assigned them to different EGs. In this case, our second stage analysis put […]

Citations

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MetalPDB institution(s)
Magnetic Resonance Center (CERM)––University of Florence, Sesto Fiorentino, Italy; Department of Chemistry––University of Florence, Sesto Fiorentino, Italy
MetalPDB funding source(s)
Supported by European Commission through the H2020 projects WestLife [675858]; EGI-ENGAGE [654142].

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