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MetaMapR

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Integrates enzymatic transformations with metabolite structural similarity, mass spectral similarity and empirical associations to generate richly connected metabolic networks. This open source, web-based or desktop software, written in the R programming language, leverages KEGG and PubChem databases to derive associations between metabolites even in cases where biochemical domain or molecular annotations are unknown.

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MetaMapR forum

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MetaMapR classification

MetaMapR specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
1.4.0
Requirements:
Shiny

MetaMapR distribution

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MetaMapR forum

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No open topic.

MetaMapR classification

MetaMapR specifications

Interface:
Web user interface
Programming languages:
R
Version:
1.4.0
Maintained:
Yes
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable

Credits

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Publications

Institution(s)

National Institutes of Health West Coast Metabolomics Center; Genome Center, University of California Davis, Davis CA, USA

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