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MetaMeta specifications


Unique identifier OMICS_18430
Name MetaMeta
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes



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  • person_outline Marcel Matschkowski <>

Publication for MetaMeta

MetaMeta in publications

PMCID: 5859664
PMID: 29554948
DOI: 10.1186/s40168-018-0437-0

[…] a need for consistency in bioinformatics methodologies across studies, but the issue is confounded by the increasing availability of different species classifiers. the recently developed method metameta [], which integrates the results from multiple species classifiers to mitigate the flaws from each individual tool, might partially address this problem. we did not use metameta […]

PMCID: 5725470
PMID: 29270165
DOI: 10.3389/fmicb.2017.02445

[…] produce a final rumen microbial profile obtained from the combination of multiple results generated from different bioinformatics tools as outlined by , who published a computational method called metameta that executes and integrates results from six metagenomic analysis tools (clark – ; dudes – ; gottcha – ; kraken – ; kaiju – ; and motus – ). if the rumen microbiome datasets […]

PMCID: 5665643
PMID: 29091030
DOI: 10.7554/eLife.29388.018

[…] of protein aggregation group for help and discussions. we thank dr. margot scheffer for critical reading of the manuscript. this work was supported by the european research council grant 311522-metameta (yk, tbs, gc and rmv) the cluster of excellence ‘macromolecular complexes’ exc 115 (w-hl and rmv), loewe grant ub-net (aml), the austrian science fund (fwf) erwin schrödinger fellowship […]

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MetaMeta institution(s)
Research Group Bioinformatics (MF1), Robert Koch Institute, Berlin, Germany; CAPES Foundation, Ministry of Education of Brazil, Brasilia Brazil
MetaMeta funding source(s)
Supported by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES) - Ciencia sem Fronteiras [BEX 13472/13-5] and by the German Federal Ministry of Health [IIA5-2512-FSB-725].

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