MetaMeta statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MetaMeta

Tool usage distribution map

This map represents all the scientific publications referring to MetaMeta per scientific context
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MetaMeta specifications


Unique identifier OMICS_18430
Name MetaMeta
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




No version available


  • person_outline Marcel Matschkowski

Publication for MetaMeta

MetaMeta citations


Species classifier choice is a key consideration when analysing low complexity food microbiome data

PMCID: 5859664
PMID: 29554948
DOI: 10.1186/s40168-018-0437-0

[…] light a need for consistency in bioinformatics methodologies across studies, but the issue is confounded by the increasing availability of different species classifiers. The recently developed method MetaMeta [], which integrates the results from multiple species classifiers to mitigate the flaws from each individual tool, might partially address this problem. We did not use MetaMeta here because […]


Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur

Front Microbiol
PMCID: 5725470
PMID: 29270165
DOI: 10.3389/fmicb.2017.02445

[…] ll produce a final rumen microbial profile obtained from the combination of multiple results generated from different bioinformatics tools as outlined by , who published a computational method called MetaMeta that executes and integrates results from six metagenomic analysis tools (CLARK – ; DUDes – ; GOTTCHA – ; KRAKEN – ; KAIJU – ; and mOTUs – ). If the rumen microbiome datasets are strengthened […]

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MetaMeta institution(s)
Research Group Bioinformatics (MF1), Robert Koch Institute, Berlin, Germany; CAPES Foundation, Ministry of Education of Brazil, Brasilia Brazil
MetaMeta funding source(s)
Supported by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES) - Ciencia sem Fronteiras [BEX 13472/13-5] and by the German Federal Ministry of Health [IIA5-2512-FSB-725].

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