MetaMeta statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MetaMeta
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Tool usage distribution map

This map represents all the scientific publications referring to MetaMeta per scientific context
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MetaMeta specifications

Information


Unique identifier OMICS_18430
Name MetaMeta
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Marcel Matschkowski

Publication for MetaMeta

MetaMeta citations

 (2)
library_books

Species classifier choice is a key consideration when analysing low complexity food microbiome data

2018
Microbiome
PMCID: 5859664
PMID: 29554948
DOI: 10.1186/s40168-018-0437-0

[…] light a need for consistency in bioinformatics methodologies across studies, but the issue is confounded by the increasing availability of different species classifiers. The recently developed method MetaMeta [], which integrates the results from multiple species classifiers to mitigate the flaws from each individual tool, might partially address this problem. We did not use MetaMeta here because […]

library_books

Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur

2017
Front Microbiol
PMCID: 5725470
PMID: 29270165
DOI: 10.3389/fmicb.2017.02445

[…] ll produce a final rumen microbial profile obtained from the combination of multiple results generated from different bioinformatics tools as outlined by , who published a computational method called MetaMeta that executes and integrates results from six metagenomic analysis tools (CLARK – ; DUDes – ; GOTTCHA – ; KRAKEN – ; KAIJU – ; and mOTUs – ). If the rumen microbiome datasets are strengthened […]


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MetaMeta institution(s)
Research Group Bioinformatics (MF1), Robert Koch Institute, Berlin, Germany; CAPES Foundation, Ministry of Education of Brazil, Brasilia Brazil
MetaMeta funding source(s)
Supported by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES) - Ciencia sem Fronteiras [BEX 13472/13-5] and by the German Federal Ministry of Health [IIA5-2512-FSB-725].

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