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|Alternative name||Meta- Metagenomic Data Base|
|Restrictions to use||None|
|Data access||File download, Browse|
|User data submission||Not allowed|
- person_outline Ching-Chia Yang
Publication for Meta- Metagenomic Data Base
Generalist species drive microbial dispersion and evolution
[…] himera sequences. In total, our processed data set contained 2,737,833 predicted 16S rRNA sequence fragments with an average length of 362 bp. The list of processed 16S rRNA sequences can be found on MetaMetaDB’s server at http://mmdb.aori.u-tokyo.ac.jp/archive.html. […]
Seasonal Analysis of Microbial Communities in Precipitation in the Greater Tokyo Area, Japan
[…] t the SILVA database (Quast et al., ) and retrieving the top hit sequence that showed e-values ≤ 1E-15. To estimate ordinary habitats for each 16S rRNA sequence, a BLASTN search was performed against MetaMetaDB (Yang and Iwasaki, ), and the top hit sequence with an e-value ≤ 1E-10 and an identity ≥ 90% was retrieved. Microbial habitability index (MHI) scores were calculated as previously described […]
Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami
[…] ts the similar overall chemical characteristics between the two soil samples. In addition, we estimated the typical habitats of the contained microbes by querying the extracted 16S rRNA genes against MetaMetaDB , a database that links 16S rRNA gene sequences to environments based on comprehensive analysis of published metagenomic and amplicon-sequencing datasets. The estimated habitats quantifie […]
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