Protocols

metaMix specifications

Information


Unique identifier OMICS_09072
Name metaMix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.2
Stability Stable
Requirements
Matrix, ggplot2, gtools, knitr, R(≥3.0.1), data.table(≥1.9.2), Rmpi
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Sofia Morfopoulou

Publication for metaMix

metaMix citation

call_split

Deep sequencing reveals persistence of cell associated mumps vaccine virus in chronic encephalitis

2016
Acta Neuropathol
PMCID: 5209397
PMID: 27770235
DOI: 10.1007/s00401-016-1629-y
call_split See protocol

[…] /viral.1.protein.faa.gz, as well as all the bacteria of the human microbiome, according to ftp://ftp.ncbi.nih.gov/genomes/HUMAN_MICROBIOM/Bacteria/all.faa.tar.gz. The BLASTx results were the input of metaMix [].For the analysis of the vaccine sequencing, we first removed 15 % of the reads as duplicates and merged overlapping reads. We trimmed the reads based on base quality (q = 20) using Trim Gal […]

metaMix institution(s)
UCL Genetics Institute, University College London, London, UK

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