MetaMLST specifications


Unique identifier OMICS_19357
Name MetaMLST
Alternative name Meta Multi Locus Sequence Typing
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some sequences.
Input format FASTQ
Output data The list of the species detected in the sample.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Bowtie2, Samtools
Maintained Yes



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  • person_outline Nicola Segata <>

Additional information

Publication for Meta Multi Locus Sequence Typing

MetaMLST institution(s)
Centre for Integrative Biology, University of Trento, Trento, Italy; Computational Biology Unit, Research and Innovation Centre, Fondazione Edmund Mach, Via Edmund Mach, San Michele all’Adige, Italy
MetaMLST funding source(s)
People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007- 2013) under REA grant agreement [PCIG13-GA-2013- 618833]; Centre for Integrative Biology, University of Trento startup funds; MIUR ‘Futuro in Ricerca’ [RBFR13EWWI 001]; Leo Pharma Foundation; Fondazione CARITRO Fellowship Rif.Int.2013.0239; Fondazione CARITRO Fellowship; ‘Terme di Comano’.

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