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MetAMOS | A modular and open source metagenomic assembly and analysis pipeline

Allows metagenomic assembly and analysis. MetAMOS is a modular and customizable framework providing a pushbutton solution for analysis of metagenomic datasets, irrespective of the sequencing technology used. The software integrates many metagenomic analysis tools that can be tailored and extended to meet specific analysis needs. It is built around the features provided by the metagenomic scaffolder Bambus 2.

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MetAMOS forum

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MetAMOS classification

MetAMOS specifications

Unique identifier:
Command line interface
Operating system:
Unix/Linux, Mac OS
Computer skills:
Software type:
Package/Module, Pipeline/Workflow
Restrictions to use:
Programming languages:
C++, Java, Perl, Python


  • iMetAMOS

MetAMOS distribution


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MetAMOS support



  • JIGSAW Team <>

Additional information


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National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA

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