MetAMOS pipeline

MetAMOS specifications


Unique identifier OMICS_01426
Name MetAMOS
Software type Package/Module, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++, Java, Perl, Python
Computer skills Advanced
Version v1.5rc3
Stability Stable
Maintained Yes


  • iMetAMOS



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  • person_outline JIGSAW Team <>

Additional information

Publications for MetAMOS

MetAMOS IN pipeline

PMCID: 4533236
PMID: 26209388
DOI: 10.1016/j.jcv.2015.06.082

[…] were retained for downstream analyses. these sequences were mapped to a database containing a human genome and cdna references, to remove host sequences. unmapped sequences were entered into the metamos pipeline [7] which employs multiple de novo assemblers with k-mer optimisation to assemble contigs. the contigs from the most effective assembly were then taxonomically classified using […]

MetAMOS institution(s)
National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA

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