MetAmp specifications

Information


Unique identifier OMICS_07447
Name MetAmp
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MetAmp

MetAmp in publications

 (2)
PMCID: 5849187
PMID: 29560123
DOI: 10.18632/oncotarget.24430

[…] there were 170 patients with stages i-iii and 214 patients with stage iv disease. based on the met-cn and met/cep7 ratio the patients were classified into 3 categories: met-amplification (metamp): met/cep7 ≥ 2 or met-cn ≥ 5; met-cn-gain (metcng): met-cn ≥ 4 to < 5; and met-negative (metneg): met-cn < 4. metamp was associated with high fatality (p=.036) and stage iv tumors […]

PMCID: 5788667
PMID: 29416799
DOI: 10.18632/oncotarget.23474

[…] mutation were determined in these 58 tumor samples. among these patients, 44 were found to be egfr mutants (egfrmut), and among them, 5 patients were also positive for met amplification (egfrmut/metamp). additionally, 14 cases were shown to be wild-type for egfr (egfrwild), with one patient also displaying met amplification (egfrwild/metamp). using the response evaluation criteria in solid […]


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MetAmp institution(s)
Graduate Program in Bioinformatics and Computational Biology, University of Idaho, Moscow, ID, USA; Institute of Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, USA
MetAmp funding source(s)
This work was made possible by NIH grants (P20GM016454, P20GM16448) from the INBRE and COBRE (NCRR), and by NSF DBI0939454.

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