MetaNeighbor specifications

Information


Unique identifier OMICS_19141
Name MetaNeighbor
Alternative name Meta-analysis via Neighbor voting
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A gene-by-sample expression matrix, a numerical vector that indicates the source of each sample, a matrix that indicates the cell type of each sample and a Gene sets of interest provided as a list of vectors or A gene-by-sample expression matrix, a sample metadata table, a vector that lists the names of all cell types and a set of high variance genes.
Output data A vector of AUROC scores representing the mean for each gene set tested, a list containing the AUROC score for each dataset and cell type and a matrix containing the means for each cell type across datasets.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Jesse Gillis <>
  • person_outline Sara Ballouz <>
  • person_outline Megan Crow <>
  • person_outline Anirban Paul <>
  • person_outline Josh Huang <>

Publications for Meta-analysis via Neighbor voting

MetaNeighbor institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Program in Neuroscience, Stony Brook University, Stony Brook, NY, USA
MetaNeighbor funding source(s)
Supported by grants from the NIH (5R01MH094705-04 and R01MH109665-01; 1R01MH113005; and 1F32MH114501), by the CSHL Robertson Neuroscience Fund, and by a NARSAD Post-doctoral Fellowship.

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