MetaNetSam specifications

Information


Unique identifier OMICS_10014
Name MetaNetSam
Alternative name Metabolic Network Sampling
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Haixu Tang

Publication for Metabolic Network Sampling

MetaNetSam citation

library_books

Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond

2016
PMCID: 5017796
PMID: 27383682
DOI: 10.1264/jsme2.ME16024

[…] ned to annotate metabolic genes. Since many pathways with component genes that are only partially found in given metagenome data are typically detected with this na├»ve approach, MAPLE (), MinPath (), MetaNetSam (), and HUMAnN () quantitatively or probabilistically evaluate whether these pathways likely function, enabling comparisons between samples. Significant biases in the databases of known pat […]

MetaNetSam institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA

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