MetaNetSam specifications

Information


Unique identifier OMICS_10014
Name MetaNetSam
Alternative name Metabolic Network Sampling
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Haixu Tang

Publication for Metabolic Network Sampling

MetaNetSam citation

library_books

Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond

2016
PMCID: 5017796
PMID: 27383682
DOI: 10.1264/jsme2.ME16024

[…] ned to annotate metabolic genes. Since many pathways with component genes that are only partially found in given metagenome data are typically detected with this naïve approach, MAPLE (), MinPath (), MetaNetSam (), and HUMAnN () quantitatively or probabilistically evaluate whether these pathways likely function, enabling comparisons between samples. Significant biases in the databases of known pat […]

MetaNetSam institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA

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