MetaNetter specifications

Information


Unique identifier OMICS_11605
Name MetaNetter
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Ab inito inference requires a list of masses (one mass per line) and a transformation list. To add correlation links, it is necessary to add quantitative measures for each mass. Thus, in the import format, each line begins with a mass followed by tabulated quantitative values if available.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 2.1
Stability Stable
Requirements
Cytoscape
Maintained Yes

Versioning


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Maintainer


  • person_outline Jourdan Fabien <>

Publication for MetaNetter

MetaNetter in publications

 (2)
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] of large integrated datasets to assist data interpretation., few tools try to actually use mass spectra features to build the networks, which can also improve annotation of unknown compounds. metanetter [] uses raw high-resolution data and a list of potential biochemical transformations to infer metabolic networks. metamapr [] builds chemical and spectral similarity networks based […]

PMCID: 2636684
PMID: 19040716
DOI: 10.1186/1756-0381-1-12

[…] knowledgeeditor [], java editor for biological pathways [], pathway studio [], genepath [], pathscout [], mapman [], metashark [], cnplot [], clans [], gscope [], bicoverlapper [], celestial3d [], metanetter[], hypergraph, vanted [], arena3d, spectralnet [], touchgraph google browser, vislink [], spectralnet [], cnplot []. before this new generation of visualization tools became available […]


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MetaNetter institution(s)
UMR1089 XĂ©nobiotiques INRA-ENVT, Toulouse, France; Groningen Bioinformatics Centre, University of Groningen, Haren, Netherlands; Institute of Biomedical and Life Sciences and4Bioinformatics Research Centre, University of Glasgow, Glasgow, UK

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