MetaOmics statistics

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Associated diseases

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MetaOmics specifications

Information


Unique identifier OMICS_04031
Name MetaOmics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Advanced
Version 0.3.4
Stability Stable
Maintained Yes

Subtools


  • CPI
  • MetaClust
  • MetaPredict

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Versioning


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Documentation


Maintainer


  • person_outline George Tseng <>

Additional information


http://www.pitt.edu/~tsengweb/MetaOmicsFAQ.htm

Publications for MetaOmics

MetaOmics in publications

 (12)
PMCID: 5802200
PMID: 29328377
DOI: 10.3892/mmr.2018.8398

[…] regulator for the metastatic process (). comprehensive understanding of metastasis progression is very important for identifying novel therapeutic strategies to prevent metastatic disease., the metaomics software in r language is comprised of the metade, metaqc and metapath packages. the metade package primarily contains 12 state-of-the-art genomic meta-analysis methods to detect […]

PMCID: 5693921
PMID: 29150601
DOI: 10.1038/s41467-017-01781-0

[…] this paper at doi:10.1038/s41467-017-01781-0., publisher's note: springer nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations., we thank the metaomics facility supported by the nci cancer center support grant p30ca056036 for rna-seq, drs. andrew aplin and edward hartsough for twist1 shrna, dr. mick edmonds for advice on cell migration […]

PMCID: 5642502
PMID: 29050227
DOI: 10.18632/oncotarget.18646

[…] the respective gene symbols. duplicate gene expression values were averaged., to make the five microarray datasets derived from the five different platforms compatible for data analysis, we used the metaomics software package (http://www.pitt.edu/∼tsengweb/metaomicshome.htm) to integrate and analyze the geo datasets []. firstly, the metaqc software package, which provided a quantitative […]

PMCID: 5434538
PMID: 28523076
DOI: 10.1186/s13068-017-0815-z

[…] if only pure cultured microorganisms are considered for enzyme discovery, some 99% of the potential sources for novel enzymes will be overlooked. for this reason, the development of systems biology metaomics approaches is instrumental. in metaomics, the microbial communities are considered to represent a “metaorganism.” this is a valid understanding of microbial communities because the majority […]

PMCID: 5372308
PMID: 28356122
DOI: 10.1186/s13045-017-0445-8

[…] for subsequent validation []. any probe that did not map to a gene id was removed as viral mirnas or non-mirna probes., to identify differentially expressed (de) mirnas between crc and pant, we used metaomics software (http://www.pitt.edu/~tsengweb/metaomicshome.htm) executed as a metade package []. for integrated analysis, the mean and standard deviation (sd) filter thresholds were specified […]


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MetaOmics institution(s)
Departments of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA; Department of Epidemiology and Biostatistics, University of Maryland, College Park, MD, USA; Department of Biostatistics, University of Florida, Gainesville, FL, USA; School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA; Division of Biostatistics, Medical College of Wisconsin, Milwaukee, WI, USA; Departments of Pathology, University of Pittsburgh, Pittsburgh, PA, USA; School of Statistics, Capital University of Economics and Business, China; Department of Mathematical Sciences, Florida Atlantic University, Boca Raton, FL, USA; Department of Statistics, Keimyung University, Korea; Henry Ford Health System, USA; Division of Biostatistics, Ohio State University, OH, USA; Department of Pharmacology & Chemical Biology, University of Pittsburgh, Pittsburgh, PA, USA; Centre for Addiction and Mental Health, University of Toronto, Toronto, ON, Canada
MetaOmics funding source(s)
Supported by NCI of the National Institutes of Health under award number R01CA190766 and by National Nature Science Foundation of China (11701391).

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