MetaP protocols

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Associated diseases

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MetaP specifications

Information


Unique identifier OMICS_25940
Name MetaP
Interface Web user interface
Restrictions to use None
Input data Some sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Additional information


http://mleg.cse.sc.edu/metaP/manual.html

MetaP in pipelines

 (2)
2013
PMCID: 3591333
PMID: 23505365
DOI: 10.1371/journal.ppat.1003185

[…] in a thermocycler, 2 hr 56°c, 30 min 95°c. the samples were centrifuged at 13,000×g for 10 min and the supernatant containing dna solution was used for amplification. the sequence of the n. ceranae metap2 gene was obtained from genbank (acc. no. xm002996491). the degenerate primer set (nmetap2f: grg cdg cvg arg cwc aya g; nmetap2r: tcr tcr cct ytt gtw agr ayy tc) was designed based […]

2012
PMCID: 3361471
PMID: 22409447
DOI: 10.1186/1471-2156-13-14

[…] sizes of pcr products were obtained for all tested genes. all sequences of tri6 and tri14 were located in the coding region of the genes (exon, see additional file ). sequences of the genes tri5, metap1, erf2, and tri10 (two parts) were stretched over two exons. sequences of genes were obtained from right to left sides of pcr products, just genes metap1 and erf2 were obtained from left […]


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MetaP in publications

 (133)
PMCID: 5868815
PMID: 29579063
DOI: 10.1371/journal.pone.0194612

[…] canada., ‡ these authors are joint senior authors on this work., protein myristoylation is a key protein modification carried out by n-myristoyltransferase (nmt) after methionine aminopeptidase 2 (metap2) removes methionine from the amino-terminus of the target protein. protein myristoylation by nmt augments several signaling pathways involved in a myriad of cellular processes, including […]

PMCID: 5865208
PMID: 29572449
DOI: 10.1038/s41598-018-23407-1

[…] association study (gwas) among 805 [236 chinese (discovery) and 569 (57 malay and 512 chinese) (validation)] found that rs75444904/kgp16506790 variant was robustly associated with uhp level (metap = 1.21 × 10−60). rs75444904 correlates well with plasma hp protein levels and multimerization in ea but was not in perfect ld (r2 = 0.911 in chinese, r2 = 0.536 in malay) and is monomorphic […]

PMCID: 5797131
PMID: 29396534
DOI: 10.1038/s41598-018-20794-3

[…] with low intra-individual variation (iccs >80%) along with minor contributions from lifestyle variables (rm2 < 5%). proteins axin1, osm, 4e-bp1, sirt2, stampb, txlna, egf, scamp3, fadd, metap.2, dkn1a, on the other hand, displayed high intra-individual variation (iccs <20%) but with equally low impact from lifestyle (rm 2< 5%). the protein most influenced by any lifestyle […]

PMCID: 5790767
PMID: 29434581
DOI: 10.3389/fmicb.2018.00066

[…] #8 (table ) were located upstream of the blaoxa-58 gene (left side of the adaptive module in figure ), with site #6 positioned closer to the disrupted isaba3 copy. site #7 is separated from #6 by a metap gene and an orf9, and displays an inverse-orientation as compared to #6. in turn, site #8 is separated from #7 by a cinh gene, and is directly-oriented as compared to #7 (figure ). […]

PMCID: 5872317
PMID: 29371506
DOI: 10.3390/jof4010014

[…] or its product []. finally, the polymorphisms in nucleotide diversity are verified for their association with phenotypic changes. with candidate gene association mapping, snps in three genes (tri1, metap1, erf2) were significantly associated with aggressiveness in f. graminearum in wheat []. an alternative is the classical association mapping where the whole genome is saturated by molecular […]


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MetaP funding source(s)
Supported by the National Science Foundation under Grant No. 0845381.

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