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MetaPath specifications

Information


Unique identifier OMICS_02624
Name MetaPath
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Mihai Pop <>

Publication for MetaPath

MetaPath in publications

 (12)
PMCID: 5802200
PMID: 29328377
DOI: 10.3892/mmr.2018.8398

[…] of metastasis progression is very important for identifying novel therapeutic strategies to prevent metastatic disease., the metaomics software in r language is comprised of the metade, metaqc and metapath packages. the metade package primarily contains 12 state-of-the-art genomic meta-analysis methods to detect differentially expressed genes (). the metaqc package is the quantitative […]

PMCID: 5748668
PMID: 29182580
DOI: 10.3390/genes8120350

[…] contig abundance estimation and annotation, and prodigal [] for structural gene prediction. kegg orthology (ko) assignment was performed using kaas [], and differential ko genes were identified by metapath []. operational taxonomic unit (otu)-based network analysis was performed with cytoscape, using an organic yfile layout. sequence data used in this study were deposited to the short read […]

PMCID: 5172609
PMID: 27997584
DOI: 10.1371/journal.pone.0168404

[…] samples were then subjected to meta-analysis., metaomics is a software suite for a systematic microarray meta-analysis pipeline containing three integrated r packages namely metaqc, metade and metapath. metaqc determines the inclusion/exclusion criteria for meta-analysis, metade provides many state-of-the-art genomic meta-analysis methods to detect differentially expressed genes […]

PMCID: 5356653
PMID: 27705936
DOI: 10.18632/oncotarget.12390

[…] genes than the other two and was thus selected for further analysis. all the 1758 de genes obtained with maxp criteria were analyzed by using meta-analysis for pathway enrichment (mape) within the metapath package to reveal cellular pathways differentially regulated between prcc1 and prcc2 []. mape analysis identified 115 enriched pathways when the mape_i method (threshold set to 0.2) […]

PMCID: 5626454
PMID: 28983419
DOI: 10.4236/iim.2016.83006

[…] [] provided a predicate oriented path finding approach to do fact checking in a large knowledge graph. vepath cluster [] proposed a combination of a vertex-centric and edge-centric approach for metapath graph analysis to enhance the clustering quality of cross domain datasets. in addition, pattern analysis was also widely used in data mining and knowledge discovery. in paper [], the author […]


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MetaPath institution(s)
Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, MD, USA

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