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MetaQuant specifications

Information


Unique identifier OMICS_23704
Name MetaQuant
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements
JRE
Maintained Yes

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Maintainer


  • person_outline Dieter Jahn <>

Additional information


http://bioinformatics.org/metaquant/tutorial.html

Publication for MetaQuant

MetaQuant in publications

 (15)
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] metab [], an r package based on functions of xcms, was developed to automate the pipeline for analysis of gc-ms data processed by amdis facilitating the use of its results for further data analysis. metaquant [] is a tool that uses a retention index to define metabolites, but it depends on other deconvolution software like amdis to extract mass spectra. both metabolitedetector [] and tagfinder […]

PMCID: 5080802
PMID: 27782799
DOI: 10.1186/s12864-016-3168-2

[…] ry construction following the protocol for the solid total rna-seq kit (applied biosystems, life technologies). libraries were sequenced with 50 cycles on 5500xl series genetic analysis system at the metaquant core facility (inra, jouy-en-josas, france)., the serum samples were collected from 31 swiss and 13 other european warmblood horses (22 males and 22 females, aged 6–32 years, average = 18 ye […]

PMCID: 4785432
PMID: 26960911
DOI: 10.1038/srep22932

[…] according to the manufacturer’s protocol for the solid® total rna-seq kit (applied biosystems, usa). the small rna libraries were sequenced on a solid 5500xl series genetic analysis system at the metaquant core facility (inra, jouy-en-josas, france). solid sequencing generated a total of 350 million reads of ~50 bp. the overall flow of the sequencing and bioinformatics analysis for small rna […]

PMCID: 4764898
PMID: 26899176
DOI: 10.1038/ncomms10743

[…] 6 °c min−1 to 243 °c, rising at 60 °c min−1 to 280 °c, held for 2 min. data were processed as before with quantification against varied amounts of standard mixtures run in parallel performed using metaquant. quantities were corrected for recovery using the l-norvaline internal standard., for labelling experiments, cells were seeded as described above. then cells were changed to nsmm, with 50% […]

PMCID: 4634966
PMID: 26539825
DOI: 10.1371/journal.pone.0142308

[…] and critical reading of the manuscript. we are also grateful to marie-françoise noirot-gros and vladimir bidnenko for stimulating discussions. sequencing of suppressor strains was performed by the metaquant platform. lc-msms analyses of the spa-tag samples were performed by alain guillot of the proteomic platform pappso. special thanks to kosei tanaka for his interest and his help in checking […]


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MetaQuant institution(s)
Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany; Institut fur Bioverfahrenstechnik, Technische Universitat Braunschweig, Braunschweig, Germany
MetaQuant funding source(s)
Supported by the German Federal Ministry of Education and Research (BMBF) for the Bioinformatics Competence Center ‘Intergenomics’ (Grant No. 031U110A/ 031U210A).

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