metaRNASeq statistics

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Associated diseases

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metaRNASeq specifications

Information


Unique identifier OMICS_03527
Name metaRNASeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.2
Stability Stable
Requirements
R(≥2.15.0), HTSFilter(≥0.1.1), DESeq(≥1.8.3), DESeq2(≥1.0.17), VennDiagram(≤1.6.7)
Source code URL https://cran.r-project.org/src/contrib/metaRNASeq_1.0.2.tar.gz
Maintained No

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Publication for metaRNASeq

metaRNASeq in publications

 (2)
PMCID: 5700078
PMID: 29167564
DOI: 10.1038/s41598-017-16343-z

[…] expression results from each study cohort were combined in a meta-analysis, using standardized p-values to follow the assumption of the fisher p-value combination method implemented by the r package metarnaseq.. we considered that genes with meta-analysis p-values < 2.0 × 10−6 (0.05/25,000) achieved transcriptome-wide association with bp response to td., to evaluate whether tsc22d3 and cebpd […]

PMCID: 4823100
PMID: 26621851
DOI: 10.18632/oncotarget.6420

[…] in at least one time-point were considered as differentially expressed. if multiple replicates in the same time-point were available the fold changes were averaged and the p-values combined using metarnaseq r package []., normalized data from cancer cell line encyclopedia (ccle) project [] were downloaded from the project website (http://www.broadinstitute.org/ccle). the gene-identifier […]


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metaRNASeq institution(s)
INRA, UMR1313 Génétique animale et biologie intégrative, Jouy-en-Josas, France; AgroParisTech, UMR1313 Génétique animale et biologie intégrative, Paris, France; Université Lille Nord de France, UDSL, EA2694 Biostatistics, Lille, France; Inria Lille Nord Europe, MODAL, Lille, France

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