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MetaSAMS specifications

Information


Unique identifier OMICS_12146
Name MetaSAMS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Andreas Schlüter <>

Publication for MetaSAMS

MetaSAMS citations

 (2)
library_books

Comparative metagenomics of biogas producing microbial communities from production scale biogas plants operating under wet or dry fermentation conditions

2015
PMCID: 4329661
PMID: 25688290
DOI: 10.1186/s13068-014-0193-8

[…] for duplicates and gc bias. mbp: mega base pairs., the community structures in the biogas plants operating under wet (bgp_wf) or dry fermentation (bgp_df) conditions were studied using carma3 [] and metasams []. the software carma3 was applied to calculate the taxonomic (microbial composition based on phylogenetic analyses) and functional profile (predicted pfam protein families based […]

library_books

Detailed analysis of metagenome datasets obtained from biogas producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

2013
PMCID: 3639179
PMID: 23557021
DOI: 10.1186/1754-6834-6-49

[…] and resistance determinants in the metagenome sequence data. sj and mz managed metagenome sequence data, initiated computational analyses and performed bioinformatic analyses by means of blast, metasams and carma3. mz deduced taxonomic profiles from metagenome sequence data and searched for putative pathogens. dw mapped metagenome sequence data on selected reference genomes. ap, mk […]


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MetaSAMS institution(s)
Institute for Bioinformatics, Center for Biotechnology, Bielefeld University, Bielefeld, Germany; Evonik-Degussa GmbH, R&D Bioproducts, Halle/Westfalen, Germany; Genome Informatics, Faculty of Technology, Bielefeld University, Bielefeld, Germany; Institute for Genome Research and Systems Biology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany

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