MetaSee specifications

Information


Unique identifier OMICS_01499
Name MetaSee
Interface Web user interface
Restrictions to use None
Programming languages Javascript
License MIT License
Computer skills Basic
Stability No
Maintained No

Maintainer


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Publication for MetaSee

MetaSee in publications

 (3)
PMCID: 4374582
PMID: 25815061
DOI: 10.1186/s13040-015-0045-5

[…] to 2d or 3d space, such as principal components analysis (pca) or multidimensional scaling (mds)., at the moment, a number of tools exist for visualization of metagenomic data: syntview [], metasee [], metaphlan [] and others, most of them are concentrated on community profiling and use the phylogenetic information for visualizing relationship between otus. some of them like syntview […]

PMCID: 4165942
PMID: 25227622
DOI: 10.1038/srep06393

[…] is also used for validity check for the results of hierarchical-based clustering.the hierarchical-based clustering method is implemented by “hclust” function of cran r, and results are visualized by metasee software and “gplots” package (gregory r., et al., gplots: various r programming tools for plotting data. http://cran.r-project.org/package=gplots) of cran r. in the hierarchical-based […]

PMCID: 3824667
PMID: 24091666
DOI: 10.1038/cddis.2013.357

[…] with pjab1 was carried out using the go term enrichment tool in amigo (http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment?session_id), the bar chart of which was constructed using metasee software. because of the insufficiency of porcine protein data and the high similarity of proteins between pig and human, human protein data were used in the go analysis., phylogenetic […]


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MetaSee institution(s)
BioEnergy Genome Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China; Shandong Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China; CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China
MetaSee funding source(s)
This work is supported by Chinese Academy of Sciences’ e-Science (grant INFO-115-D01-Z006), Ministry of Science and Technology’s high-tech (863) (grant 2009AA02Z310), and Natural Science Foundation of China (grant 61103167).

MetaSee review

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Anonymous user #400

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Web
For visualized analysis, it is perfect!