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MetaSee | An interactive and extendable visualization toolbox for metagenomic sample analysis and comparison

An extendable toolbox to facilitate the interactive visualization of metagenomic samples of interests. MetaSee includes: (I) a core visualization engine that is composed of different views for comparison of multiple samples: Global view, Phylogenetic view, Sample view and Taxa view, as well as link-out for more in-depth analysis; (II) front-end user interface with real metagenomic models that connect to the above core visualization engine and (III) open-source portal for the development of plug-ins for MetaSee. MetaSee is not only for metagenomics, it is a flexible framework that can also take other dataset of tree structure as input and give beautiful visualization results.

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1 user review

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Great

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For visualized analysis, it is perfect!

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MetaSee classification

MetaSee specifications

Unique identifier:
OMICS_01499
Restrictions to use:
None
License:
MIT License
Stability:
Stable
Interface:
Web user interface
Programming languages:
Javascript
Computer skills:
Basic
Maintained:
No

MetaSee support

Maintainer

This tool is not available anymore.

Credits

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Publications

Institution(s)

BioEnergy Genome Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China; Shandong Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China; CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China

Funding source(s)

This work is supported by Chinese Academy of Sciences’ e-Science (grant INFO-115-D01-Z006), Ministry of Science and Technology’s high-tech (863) (grant 2009AA02Z310), and Natural Science Foundation of China (grant 61103167).

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