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Publication for MetaSee
Bacterial rose garden for metagenomic SNP based phylogeny visualization
[…] n reduction to 2D or 3D space, such as principal components analysis (PCA) or multidimensional scaling (MDS).At the moment, a number of tools exist for visualization of metagenomic data: SynTView , MetaSee , MetaPhlAn  and others, most of them are concentrated on community profiling and use the phylogenetic information for visualizing relationship between OTUs. Some of them like SynTView all […]
Rapid comparison and correlation analysis among massive number of microbial community samples based on MDV data model
[…] is also used for validity check for the results of hierarchical-based clustering.The hierarchical-based clustering method is implemented by “HClust” function of CRAN R, and results are visualized by MetaSee software and “gplots” package (Gregory R., et al., gplots: Various R programming tools for plotting data. http://CRAN.R-project.org/package=gplots) of CRAN R. In the hierarchical-based cluster […]
Porcine JAB1 significantly enhances apoptosis induced by staurosporine
[…] nteracting with pJAB1 was carried out using the GO Term Enrichment tool in AmiGO (http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment?session_id), the bar chart of which was constructed using metasee software. Because of the insufficiency of porcine protein data and the high similarity of proteins between pig and human, human protein data were used in the GO analysis. […]
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