metaSNV specifications


Unique identifier OMICS_19879
Name metaSNV
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format SAM, BAM
Operating system Unix/Linux
Programming languages C++, Python, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements boost, htslib, samtools, pandas, numpy
Maintained Yes



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Additional information

Publication for metaSNV

metaSNV institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Department of Biology, Institute of Microbiology, ETH Zurich, Zurich, Switzerland; Department of Biology, Ecole normale supérieure, Paris, France; Max-Delbruck-Centre for Molecular Medicine, Berlin, Germany; Department of Bioinformatics, Biocenter, University of Wurzburg, Wurzburg, Germany; Molecular Medicine Partnership Unit, Heidelberg, Germany
metaSNV funding source(s)
Supported by the European Molecular Biology Laboratory and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MicrobioS, grant agreement No. 669830).

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