metaSNV specifications

Unique identifier:
OMICS_19879
Interface:
Command line interface
Input format:
SAM, BAM
Programming languages:
C++, Python, Shell (Bash)
Computer skills:
Advanced
Requirements:
boost, htslib, samtools, pandas, numpy
Software type:
Application/Script
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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metaSNV distribution

download

metaSNV support

Maintainer

  • Peer Bork <>

Additional information

http://metasnv.embl.de/tutorial.html

forum

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Credits

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Publications

Institution(s)

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Department of Biology, Institute of Microbiology, ETH Zurich, Zurich, Switzerland; Department of Biology, Ecole normale supérieure, Paris, France; Max-Delbruck-Centre for Molecular Medicine, Berlin, Germany; Department of Bioinformatics, Biocenter, University of Wurzburg, Wurzburg, Germany; Molecular Medicine Partnership Unit, Heidelberg, Germany

Funding source(s)

Supported by the European Molecular Biology Laboratory and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MicrobioS, grant agreement No. 669830).

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