MetaSpace specifications

Unique identifier:
OMICS_27289
Interface:
Web user interface
Input data:
A high-resolution imaging mass spectrometry dataset.
Computer skills:
Basic
Maintained:
Yes
Alternative name:
pySM
Restrictions to use:
None
Input format:
imzML
Stability:
Stable

MetaSpace distribution

download

MetaSpace specifications

Unique identifier:
OMICS_27289
Software type:
Application/Script, Pipeline/Workflow
Restrictions to use:
None
Input format:
imzML+CSV
Programming languages:
Python
Computer skills:
Advanced
Requirements:
git, wget, unzip
Alternative name:
pySM
Interface:
Command line interface
Input data:
A high-resolution mass spectrometry imaging dataset; a metabolite database and a configuration file.
Operating system:
Unix/Linux, Mac OS
License:
Apache License version 2.0
Stability:
Stable
Maintained:
Yes

versioning

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MetaSpace distribution

download

MetaSpace support

Maintainers

  • Andrew Palmer <>
  • Theodore Alexandrov <>
  • Team MetaSpace <>
  • Andrew Palmer <>
  • Theodore Alexandrov <>
  • Team MetaSpace <>

Additional information

https://www.slideshare.net/Metaspace2020/metaspace-training-course-ourcon-v-2017

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Credits

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Publications

Institution(s)

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Center for Industrial Mathematics, University of Bremen, Bremen, Germany; Protim, Inserm U1085, IRSET, Rennes, France; Université de Rennes I, Rennes, France; Bruker Daltonik GmbH, Bremen, Germany; National Research University Higher School of Economics, St. Petersburg, Russia; Higher Institute of Information Technologies and Information Systems, Kazan Federal University, Kazan, Russia; SCiLS GmbH, Bremen, Germany; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California, USA

Funding source(s)

Supported by the European Union’s Horizon2020 and FP7 programs under grant agreements 634402 and 305259 and from the Russian Government Program of Competitive Growth of Kazan Federal University.

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