MetaSpace specifications
Information
| Unique identifier | OMICS_27289 |
|---|---|
| Name | MetaSpace |
| Alternative name | pySM |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | A high-resolution imaging mass spectrometry dataset. |
| Input format | imzML |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Download
Maintainers
- person_outline Andrew Palmer <>
- person_outline Theodore Alexandrov <>
- person_outline Team MetaSpace <>
Additional information
https://www.slideshare.net/Metaspace2020/metaspace-training-course-ourcon-v-2017
Information
| Unique identifier | OMICS_27289 |
|---|---|
| Name | MetaSpace |
| Alternative name | pySM |
| Software type | Application/Script, Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | A high-resolution mass spectrometry imaging dataset; a metabolite database and a configuration file. |
| Input format | imzML+CSV |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | Python |
| License | Apache License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements | git, wget, unzip |
| Maintained | Yes |
Download
Versioning
Add your version
Maintainers
- person_outline Andrew Palmer <>
- person_outline Theodore Alexandrov <>
- person_outline Team MetaSpace <>
Additional information
https://www.slideshare.net/Metaspace2020/metaspace-training-course-ourcon-v-2017
Publication for MetaSpace
2017 Nat Methods
PMID: 27842059
DOI: 10.1038/nmeth.4072
MetaSpace institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Center for Industrial Mathematics, University of Bremen, Bremen, Germany; Protim, Inserm U1085, IRSET, Rennes, France; Université de Rennes I, Rennes, France; Bruker Daltonik GmbH, Bremen, Germany; National Research University Higher School of Economics, St. Petersburg, Russia; Higher Institute of Information Technologies and Information Systems, Kazan Federal University, Kazan, Russia; SCiLS GmbH, Bremen, Germany; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California, USA
MetaSpace funding source(s)
Supported by the European Union’s Horizon2020 and FP7 programs under grant agreements 634402 and 305259 and from the Russian Government Program of Competitive Growth of Kazan Federal University.
MetaSpace reviews
Be the first to review MetaSpace
