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MetaSpace specifications
Information
| Unique identifier | OMICS_27289 |
|---|---|
| Name | MetaSpace |
| Alternative name | pySM |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | A high-resolution imaging mass spectrometry dataset. |
| Input format | imzML |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
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Maintainers
- person_outline Andrew Palmer <>
- person_outline Theodore Alexandrov <>
- person_outline Team MetaSpace <>
Additional information
Information
| Unique identifier | OMICS_27289 |
|---|---|
| Name | MetaSpace |
| Alternative name | pySM |
| Software type | Application/Script, Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | A high-resolution mass spectrometry imaging dataset; a metabolite database and a configuration file. |
| Input format | imzML+CSV |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | Python |
| License | Apache License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements |
git, wget, unzip
|
| Maintained | Yes |
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Versioning
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Maintainers
- person_outline Andrew Palmer <>
- person_outline Theodore Alexandrov <>
- person_outline Team MetaSpace <>
Additional information
Publication for MetaSpace
MetaSpace in publications
(4)[…] image x and the fixed binary image y originating from the optical image used for msi acquisition., fticr datasets generated during and/or analyzed during the current study are available in the eu-metaspace repository [http://metaspace2020.eu/]. other datasets generated during and/or analyzed during the current study are not publicly available but are available from the corresponding author […]
[…] easily configurable sve systems and applications have been developed. for example, muvr [] used a oculus rift hmd and a razer hydra tracking system, and created multiuser virtual reality platform. metaspace [] included a self-avatar by tracking each user’s body with a kinect device., inspired by these recently developed systems, we developed an sve system and provided a self-avatar […]
Translational utility of a hierarchical classification strategy in biomolecular data analytics
[…] with regard to jurisdictional claims in published maps and institutional affiliations., we acknowledge the financial support for bioinformatics developments as part of bbsrc (bb/l020858/1) and eu-metaspace (634402) projects; and imperial college stratified medicine graduate training programme in systems medicine and spectroscopic profiling (stratigrad). k. a. v. gratefully acknowledges […]
Integration of High Volume Molecular and Imaging Data for Composite Biomarker Discovery in the Study of Melanoma
[…] in a decision-fusion technique combining heterogeneous breast cancer data. lee et al. [] proposed a generalized fusion framework (gff) for homogenous data representation and subsequent fusion in the metaspace, using dimensionality reduction techniques. the metaspace comprises the projections of the heterogeneous data streams transformed in a way that scale and alleviate dimensionality […]
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