MetaSpace specifications

Information


Unique identifier OMICS_27289
Name MetaSpace
Alternative name pySM
Interface Web user interface
Restrictions to use None
Input data A high-resolution imaging mass spectrometry dataset.
Input format imzML
Computer skills Basic
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Andrew Palmer <>
  • person_outline Theodore Alexandrov <>
  • person_outline Team MetaSpace <>

Additional information


https://www.slideshare.net/Metaspace2020/metaspace-training-course-ourcon-v-2017

Information


Unique identifier OMICS_27289
Name MetaSpace
Alternative name pySM
Software type Application/Script, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A high-resolution mass spectrometry imaging dataset; a metabolite database and a configuration file.
Input format imzML+CSV
Operating system Unix/Linux, Mac OS
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Requirements git, wget, unzip
Maintained Yes

Download


Versioning


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Maintainers


  • person_outline Andrew Palmer <>
  • person_outline Theodore Alexandrov <>
  • person_outline Team MetaSpace <>

Additional information


https://www.slideshare.net/Metaspace2020/metaspace-training-course-ourcon-v-2017

Publication for MetaSpace

MetaSpace institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Center for Industrial Mathematics, University of Bremen, Bremen, Germany; Protim, Inserm U1085, IRSET, Rennes, France; Université de Rennes I, Rennes, France; Bruker Daltonik GmbH, Bremen, Germany; National Research University Higher School of Economics, St. Petersburg, Russia; Higher Institute of Information Technologies and Information Systems, Kazan Federal University, Kazan, Russia; SCiLS GmbH, Bremen, Germany; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California, USA
MetaSpace funding source(s)
Supported by the European Union’s Horizon2020 and FP7 programs under grant agreements 634402 and 305259 and from the Russian Government Program of Competitive Growth of Kazan Federal University.

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