Metassembler pipeline

Metassembler specifications

Information


Unique identifier OMICS_10069
Name Metassembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Michael Schatz <>

Publication for Metassembler

Metassembler IN pipeline

2017
PMCID: 5465620
PMID: 28596401
DOI: 10.1128/genomeA.00474-17

[…] configuration, achieving a genome coverage of 120-fold. assembly was performed with spades version 3.9.0 and idba_ud version 1.1.1 parallel, and the contigs obtained were merged and optimized using metassembler version 1.5 (12–14). contigs were reordered using mauve version snapshot_2015_02_13 using the genome of p. chlororaphis 189 as a reference (15)., the draft genome of p. chlororaphis […]

Metassembler institution(s)
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México

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