MetAssimulo protocols

View MetAssimulo computational protocol

MetAssimulo statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left NMR simulation chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

MetAssimulo specifications

Information


Unique identifier OMICS_23111
Name MetAssimulo
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Concentration files, an NMR Standard Spectral Database (NSSD), an experiment file, a proton file, multiplet data files, inter-metabolite correlations, synonym files and a parameter file.
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Medium
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline t.ebbels <>

Publication for MetAssimulo

MetAssimulo in pipeline

2018
PMCID: 5809546
PMID: 29479299
DOI: 10.1007/s11306-018-1321-4

[…] use spectral deconvolution, compound spike-in methods or peak look-up tables (martinez-arranz et al. ). a variety of software packages for nmr statistical spectroscopy have been developed including, metassimulo (muncey et al. ), automics (wang et al. ), statistical total correlation spectroscopy (cloarec et al. , ), and mvapack (worley and powers )., for relatively simple biofluids […]


To access a full list of citations, you will need to upgrade to our premium service.

MetAssimulo in publications

 (2)
PMCID: 5809546
PMID: 29479299
DOI: 10.1007/s11306-018-1321-4

[…] analysis, metabolite annotation and biological interpretation, mvapack for multivariate analysis (worley and powers ), workflow4metabolomics for multivariate analysis (giacomoni et al. ), metassimulo for multivariate analysis (muncey et al. ), the human metabolome database (hmdb) for metabolite annotation and biological interpretation (wishart et al. ), and the biomagresbank (bmrb) […]

PMCID: 3722095
PMID: 23844891
DOI: 10.1186/1475-2859-12-69

[…] for data analysis and visualization have been developed, such as mzmine [,] and xcms for ms data []; gavin [] and metab [] for gc-ms analysis; batman [] and bquant [] for nmr analysis as well as, metassimulo [] and mbrole [], metexplore [] and msea [] to handle and visualize data sets of increasing size., sampling and pre-analysis represent the first steps in the generation of metabolome […]


To access a full list of publications, you will need to upgrade to our premium service.

MetAssimulo institution(s)
Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, UK; Biomolecular Medicine, Department of Surgery and Cancer, Imperial College London, UK.
MetAssimulo funding source(s)
Supported by an MRC capacity building studentship and, in part, by the Biotechnology and Biological Sciences Research Council (Grant Ref.BB/E20372/1).

MetAssimulo reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MetAssimulo