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Metastats specifications

Information


Unique identifier OMICS_07814
Name Metastats
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline James Robert White

Publication for Metastats

Metastats citations

 (200)
library_books

High species diversity of trichostrongyle parasite communities within and between Western Canadian commercial and conservation bison herds revealed by nemabiome metabarcoding

2018
PMCID: 5952520
PMID: 29764472
DOI: 10.1186/s13071-018-2880-y

[…] ac) between the cow-calf production groups compared to the feeder production groups for the commercial herds was 0.256381.Beta diversity, at the species level, among populations was assessed with the MetaStats function in Mothur (pairwise P-values provided in Additional file : Table S2 and differences in species prevalence by animal age for the conservation herds is provided in Additional file : T […]

library_books

The fallopian tube microbiome: implications for reproductive health

2018
Oncotarget
PMCID: 5940370
PMID: 29765558
DOI: 10.18632/oncotarget.25059

[…] ere generated using QIIME, and were visualised using the function heatmap.2 in the R gplots library []. Comparisons between paired samples were performed using the non-parametric statistical software Metastats which corrects for multiple comparisons is robust for sparse data []. […]

call_split

The impact of storage buffer, DNA extraction method, and polymerase on microbial analysis

2018
Sci Rep
PMCID: 5908915
PMID: 29674641
DOI: 10.1038/s41598-018-24573-y
call_split See protocol

[…] r) hypothesis testing was performed to test whether the differential clustering of the PBS samples in the dendrograms was significant. Differences in the 30 most abundant OTUs were assessed using the metastats command in mothur and p-values for differences in individual OTUs were corrected for multiple comparisons using Bonferroni correction. Values of p < 0.05 were considered statistically signif […]

library_books

Identification of Major Rhizobacterial Taxa Affected by a Glyphosate Tolerant Soybean Line via Shotgun Metagenomic Approach

2018
Genes
PMCID: 5924556
PMID: 29659545
DOI: 10.3390/genes9040214

[…] Wilcoxon rank-sum test was used to examine the significance of alpha diversity indices. Metastats [], described in detail in our previous studies [,], was used to obtain the relative abundance differences of microbial communities between groups (groups = 2, samples per group ≥ 3). The ob […]

library_books

Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

2018
BMC Microbiol
PMCID: 5879832
PMID: 29609542
DOI: 10.1186/s12866-018-1171-2

[…] tion in “Vegan”. Similarity percentage (SIMPER) procedure implemented in “Vegan” was used to quantify the contribution of individual OTUs to the overall Bray-Curtis dissimilarity between the groups. “MetaStats” [] was used to test for OTUs and orders with statistically significant differential abundances between the exposure groups. Only OTUs containing more than 0.1% of the total number of reads […]

call_split

Dietary butyrate glycerides modulate intestinal microbiota composition and serum metabolites in broilers

2018
Sci Rep
PMCID: 5862971
PMID: 29563518
DOI: 10.1038/s41598-018-22565-6
call_split See protocol

[…] s in the cecal digesta was created by the R package gplots. Relative abundances of taxonomy and OTU were compared between the control and BG-treated group using a permutation test via online software Metastats. The qPCR data were subjected to simple t-test. Significance level was set at 0.05. […]

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Metastats institution(s)
Department of Computer Science, Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA

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