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Metastudent specifications

Information


Unique identifier OMICS_20187
Name Metastudent
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Java, Perl, Python, Ruby
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.11
Stability Stable
Requirements
BLASTP, Metastudent-Data
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Burkhard Rost

Additional information


https://github.com/Rostlab/MetaStudent/wiki

Publication for Metastudent

Metastudent citation

library_books

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

2016
BMC Genomics
PMCID: 4765031
PMID: 26911138
DOI: 10.1186/s12864-016-2456-1

[…] of amino acids, []), DISULFIND (disulfide bonds, []). For disordered region predictions, PROFbval [], UCON [] and METADISORDER [] were used. Further, PROFtmb (bacterial transmembrane β-barrels, []), Metastudent (Gene Ontology terms, []), and LocTree3 (subcellular localization, []) were applied. SignalP4.1 was used for the prediction of signal peptides []. In all cases, default settings were used. […]


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Metastudent institution(s)
TUM, Department of Informatics, Bioinformatics & Computational Biology, Garching, Germany; Institute of Advanced Study (TUM-IAS) Lichtenbergstr, Garching, Germany; New York Consortium on Membrane Protein Structure (NYCOMPS) & Department of Biochemistry and Molecular Biophysics Columbia University, New York, NY, USA
Metastudent funding source(s)
Supported by a grant from the Alexander von Humboldt foundation through the German Ministry for Research and Education (BMBF: Bundesministerium fuer Bildung und Forschung).

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