MetaTISA specifications

Information


Unique identifier OMICS_09994
Name MetaTISA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Publication for MetaTISA

MetaTISA citations

 (2)
library_books

Gene Prediction in Metagenomic Fragments with Deep Learning

2017
Biomed Res Int
PMCID: 5698827
PMID: 29250541
DOI: 10.1155/2017/4740354

[…] assifier that integrate entropy density profile of codon usage, translation initiation site scores, and ORF length as the input features, and finally adjusting TISs by employing a modified version of MetaTISA. Although the existing metagenomics gene predictors or methods can effectively identify genes, these predictors employ the shallow architectures such as hidden Markov models (HMMs), SVMs, and […]

library_books

Horizontal gene transfer in an acid mine drainage microbial community

2015
BMC Genomics
PMCID: 4490635
PMID: 26141154
DOI: 10.1186/s12864-015-1720-0

[…] t coding regions in metagenomic sequences were developed [, , ]. The eight remaining organisms (including two bacteria and six archaea), were analyzed using MetaGeneAnnotator [] to identify genes and MetaTISA [] to locate Translation Initiation Sites (TISs). Besides the AMD microorganisms, nine previously isolated organisms (five bacteria and four archaea) were added to the phylogenetic analysis t […]

MetaTISA institution(s)
State Key Laboratory for Turbulence and Complex Systems, Department of Biomedical Engineering and Center for Theoretical Biology, Peking University, Beijing, China
MetaTISA funding source(s)
National Natural Science Foundation of China (30770499 and 10721403); Wallace H. Coulter GaTech/Emory-PKU BME Collaborative Research Seed Grant Program

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