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|Interface||Command line interface|
|Restrictions to use||Academic or non-commercial use|
|Operating system||Unix/Linux, Mac OS, Windows|
No version available
Publication for Metatool
A review of computational tools for design and reconstruction of metabolic pathways
[…] ormation, graph-based methods can make prediction with similar accuracy as stoichiometry-based methods. Moreover, stoichiometry-based pathway search methods can operate on the S matrix alone (such as METATOOL 5.0 , optStoic , and XTMS ) to identify cofactor-balanced pathways. However, the reversibility of a reaction has to be defined as constraints alongside the S matrix while a directed graph inh […]
How important is thermodynamics for identifying elementary flux modes?
[…] ementation of both programs is performed with MATLAB 2015a, and they are freely available on our website https://www.lri.fr/~speres/EFM/ and figshare https://figshare.com/. They are both connected to METATOOL  to compute the EFMs. Celldesigner  was used to design the metabolic network and to visualize all the EFMs generated with EFMdraw. […]
Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data
[…] The calculation of elementary modes was performed in MATLAB using the Metatool toolbox  (modo_elementar.m code in the Supplemental Information). A total of 13 elementary flux modes were found for the fatty acid biosynthesis pathway of E. antarcticum B7 (Additional Fil […]
Systematic Identification of Anti Fungal Drug Targets by a Metabolic Network Approach
[…] 204 metabolites.The resulting model of central primary metabolism for A. fumigatus is illustrated in Figure , and given in full detail in the Supplementary Material (input files for calculations with Metatool see Supplementary Table ; all enzyme reactions considered are also given (Supplementary Table , with the mapping to gene identifiers given in Supplementary Table ) so that from the stoichiome […]
The Influence of Executive Functioning on Facial and Subjective Pain Responses in Older Adults
[…] re stimulation) using facial descriptors extracted out of existing observational pain assessment scales. This extraction has led to the development of the Pain Assessment in Impaired Cognition (PAIC) metatool  as part of a European funded COST action (TD1005) and we used all facial items of this PAIC tool (see ). All facial expressions were rated by an independent rater, trained by the principal […]
Orofacial Pain during Mastication in People with Dementia: Reliability Testing of the Orofacial Pain Scale for Non Verbal Individuals
[…] is true for the literature on management of orofacial pain in this group [, ].During the international and interdisciplinary process towards the development the Pain Assessment in Impaired Cognition metatool , the importance of developing a specific orofacial pain assessment tool was noted. Unfortunately, even though the recently developed Orofacial Mobilization-Observation-Behavior-Intensity-D […]
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