MetaTrans specifications


Unique identifier OMICS_14302
Name MetaTrans
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A sequence paired-end file.
Input format FASTQ
Output data An raw counts and differential expression files produced by the functional and taxonomical analyses.
Operating system Unix/Linux
Programming languages C, C++, Java, Perl, Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements GenomicRanges, IRanges, ShortRead, DESeq2, JRE, Python::NumPy, BioPython, USEARCH
Maintained Yes



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  • person_outline Chaysavanh Manichanh <>

Publication for MetaTrans

MetaTrans institution(s)
Digestive Research Unit, Vall d’Hebron Research Institute, Barcelona, Spain; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; CIBERehd, Instituto de Salud Carlos III, Madrid, Spain
MetaTrans funding source(s)
This study was supported by grants from the Instituto de Salud Carlos III/FEDER [CP13/00181, PI14/00764].

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