Metatranscriptomic sequencing data analysis software tools

Metatranscriptomic sequencing data analysis software tools

Metatranscriptomics is the study and profiling of the complete set of RNA transcripts that are expressed by a community of microbe at a given time. Metatranscriptomic sequencing is used to study the function and activity of transcripts, to establish gene activity diversity, gene expression abundance, and differential gene expression analysis. Metatranscriptomics software tools are used to identify community-wide gene transcription and pathway analysis, for prediction-based and homology-based taxonomy, phylogenomics and more.

Data preprocessing

Data processing

Binning

Quantification

Expression

Annotation

Genome-wide association study/Linkage/QTL

Phylogenomics

Data visualization

Network analysis

Enrichment analysis

Integrative analysis

Workflows

File manipulation

Unclassified tools