MetaVelvet pipeline

MetaVelvet specifications


Unique identifier OMICS_01427
Name MetaVelvet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes



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Publication for MetaVelvet

MetaVelvet IN pipeline

PMCID: 4226467
PMID: 25383623
DOI: 10.1371/journal.pone.0110505

[…] blastp hits per 10 million input sequences (±sd). the minimum % identity cutoff was 70%; the minimum alignment length was 21 amino acids., a de novo assembly of processed sequence reads using metavelvet resulted in 142,061 contigs with a mean n50 = 715 bp (±337.32; sd) per sample. approximately 175,375 orfs were predicted from these contigs using fraggenescan. the orfs were annotated […]

MetaVelvet institution(s)
Department of Biosciences and Informatics, Keio University, Kohoku-ku, Yokohama, Japan

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