METAVIR specifications

Information


Unique identifier OMICS_03513
Interface Web user interface
Restrictions to use None
Input data Some sequence datasets composed of short reads or assembled contigs.
Output format FASTA
Biological technology Illumina
Programming languages Javascript, Perl, PHP, R
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Viruses

Additional information


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METAVIR articles

METAVIR citation

2017
PMCID: 5253355

[…] had pfam annotations indicating viral origin, and 392 proteins that had matched viral proteins in the refseq-p and/or ncbi-nr databases (max 1.0e-4, min bit-score 45), but had not been detected by metavir. our final dataset of predicted viral proteins therefore consisted of 1674 sequences (table s2)., to determine the lca affiliation for these proteins, we repeated blastp against the viral […]

METAVIR institution(s)
Laboratoire Microorganismes: Génome et Environnement, Clermont Université, Université Blaise Pascal, Clermont-Ferrand, France; CNRS, UMR 6023, LMGE, Aubiere, France; Centre Régional de Ressources Informatiques, Clermont Université, Université Blaise Pascal, Clermont-Ferrand, France
METAVIR funding source(s)
Supported by a PhD grant from the French defense procurement agency (DGA, Direction Générale de l’Armement).

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