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Associated diseases

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metaXCMS specifications

Information


Unique identifier OMICS_02635
Name metaXCMS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No

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Publications for metaXCMS

metaXCMS in publications

 (5)
PMCID: 5964348
DOI: 10.1128/mBio.00820-18

[…] using the program xcms (). principal-component analyses of all samples showed that f.┬áfujikuroi metabolism is shifted most in response to gmi1000-conditioned, high-nitrogen medium (). using the metaxcms package (), we found that, in accordance with previous studies (), a low-nitrogen condition induces far more spectral features (573) () than it represses (207) () compared to high-nitrogen […]

PMCID: 4773761
PMID: 26932318
DOI: 10.1038/srep22526

[…] including linoleic acid and arachidonic acid. dha glychocholic acid, l-carnitine and l-carnitine derivatives were also increased in control kidneys compared to ckd., a second order analysis in metaxcms was used to determine common metabolic differences in plasma, liver, heart and kidney tissue between control and ckd rats. all tissues shared 8 common metabolites, which were significantly […]

PMCID: 4141623
PMID: 24153306
DOI: 10.1038/nature12710

[…] were converted to mzxml files and subsequently aligned by xcms. the resulting aligned features derived from wt, lppardko, scramble and lacc1kd serum were compared to identify common features using metaxcms with a mass tolerance of 0.01 and retention time tolerance of 60 seconds. identical procedures were carried out to generate common features from adppar╬┤ and adgfp liver lysates. […]

PMCID: 3398977
PMID: 22866179
DOI: 10.1371/journal.pone.0040695

[…] vs sp). the adducts, isotopes and neutral losses were identified using camera algorithm based on peak annotation . following this, the data from all four treatment combinations were combined using metaxcms , separately for rachis and spikelets. the accurate mass and their abundance (relative intensity) were imported to ms excel; peaks that were not consistent among replicates […]

PMCID: 3380757
PMID: 22759585
DOI: 10.1186/1477-5956-10-S1-S8

[…] metabolites can be confirmed., in analysis of lc-ms data from multiple experiments, the ions selected from each experiment are compared to determine overlapping ions. for example, the software tool metaxcms [] performs second-order analysis of untargeted metabolomic data from multiple sample groups representing different models of the same phenotype. the pairs of sample groups are first […]


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metaXCMS institution(s)
Department of Genetics, Washington University School of Medicine, St Louis, MO, USA

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