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MetCirc specifications

Information


Unique identifier OMICS_17426
Name MetCirc
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Thomas Naake <>

Publication for MetCirc

MetCirc citation

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] extraction of structure–activity relationships. metfamily [] groups metabolites into families based on an integrated analysis of ms1 abundances, with ms/ms facilitating further data interpretation. metcirc [] is an r tool that is particularly useful for comparative analysis from cross-species and cross-tissue experiments through computation of similarity between individual ms/ms spectra […]


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MetCirc institution(s)
Centre for Organismal Studies, University of Heidelberg, Heidelberg, Germany
MetCirc funding source(s)
This work was supported within the framework of the Deutsche Forschungsgemeinschaft Excellence Initiative to the University of Heidelberg.

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