MetExplore statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MetExplore
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Tool usage distribution map

This map represents all the scientific publications referring to MetExplore per scientific context
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Associated diseases

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Popular tool citations

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MetExplore specifications

Information


Unique identifier OMICS_02720
Name MetExplore
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtools


  • MetaboRank
  • MetaboRank

Publications for MetExplore

MetExplore citations

 (9)
library_books

Beyond Chloride Brines: Variable Metabolomic Responses in the Anaerobic Organism Yersinia intermedia MASE LG 1 to NaCl and MgSO4 at Identical Water Activity

2018
Front Microbiol
PMCID: 5835128
PMID: 29535699
DOI: 10.3389/fmicb.2018.00335

[…] sted p-values (Benjamini and Hochberg corrected) with a maximum of 0.05. Currently, the mapping and calculation of the library coverage table includes information from every organism available in the MetExplore database as no filter fallowing a search for a specific organism can be applied. […]

library_books

From correlation to causation: analysis of metabolomics data using systems biology approaches

2018
Metabolomics
PMCID: 5829120
PMID: 29503602
DOI: 10.1007/s11306-018-1335-y

[…] et al. ). MetaMapp is independent of the experimental technology utilized to identify metabolomics profiles, thus providing a way to integrate and visualize data from different metabolomics platforms.MetExplore (Cottret et al. ) is a computational pipeline designed to map chemical libraries on genome-scale metabolic networks. This tool can be used to obtain statistics on the experimental coverage […]

library_books

Metabolomics with Nuclear Magnetic Resonance Spectroscopy in a Drosophila melanogaster Model of Surviving Sepsis

2016
PMCID: 5192453
PMID: 28009836
DOI: 10.3390/metabo6040047

[…] ption in relation to tricarboxylic acid (TCA) cycle and amino acid utilization. The involvement of these metabolic pathways was visualized and confirmed their enzymatic and genetic possibility by the Metexplore metabolic networks using the Drosophila melanogaster genome-based method. The cellular and molecular mechanisms and signaling pathways involved in Drosophila wound repair and infection are […]

library_books

A Combinatorial Algorithm for Microbial Consortia Synthetic Design

2016
Sci Rep
PMCID: 4931573
PMID: 27373593
DOI: 10.1038/srep29182

[…] imately also on the production of PDO. Hence associating K. pneumoniae with a methanogen has been proposed to reduce such effect.All the genome-scale models (GEMs) used were extracted from Kegg using MetExplore. In both examples, cofactors and co-enzymes obtained from a list available in Kegg were removed. The networks, constructed as explained previously, were filtered using a lossless compressio […]

library_books

A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks

2016
Front Mol Biosci
PMCID: 4754433
PMID: 26909353
DOI: 10.3389/fmolb.2016.00002

[…] be found under various file formats, the main one being Systems Biology Markup Language (SBML) (Hucka et al., ). Repositories like BioModels (Wimalaratne et al., ), BIGG (Schellenberger et al., ), or MetExplore (Cottret et al., ) were created to warehouse these networks. Hence, the challenge is to link chemical libraries and these repositories in order to find in which extent libraries' contents c […]

library_books

Dynamic Metabolic Disruption in Rats Perinatally Exposed to Low Doses of Bisphenol A

2015
PLoS One
PMCID: 4627775
PMID: 26517871
DOI: 10.1371/journal.pone.0141698

[…] metabolic profiling provides an instantaneous picture of dynamic integrative processes (functional biochemical pathways). In addition, specific bioinformatic tools and methods such as the web-server MetExplore (www.metexplore.fr) have made it possible to “plug” the metabolite shifts into a global metabolic network to produce a very informative picture of the status of the system while opening the […]


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MetExplore institution(s)
INRA, UMR1089, Xénobiotiques, Toulouse, France

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