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MetExplore specifications

Information


Unique identifier OMICS_02720
Name MetExplore
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • MetaboRank

Publications for MetExplore

MetExplore citations

 (12)
library_books

Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data

2018
BMC Bioinformatics
PMCID: 5749025
PMID: 29291722
DOI: 10.1186/s12859-017-2006-0

[…] duplicated entries and might present false positives. the performance of over-representation analysis (ora) tools, including biocyc/humancyc, consensuspathdb, impala, mbrole, metaboanalyst, metabox, metexplore, mpea, pathvisio and reactome and the mapping tool keggrest, was examined. results were mostly consistent among tools and between real and enriched data despite the variability […]

library_books

The future of metabolomics in ELIXIR

2017
F1000Res
PMCID: 5627583
PMID: 29043062
DOI: 10.5256/f1000research.13363.r25758

[…] metabolomes. the curated data (spectra, compounds, networks) and workflows will be of high value as input for the corresponding reference repositories and e-infrastructures (metabolights, chebi, metexplore, workflow4metabolomics, phenomenal)., europe is a major provider of massive and high-quality metabolomics data. large endeavors such as the mrc-nihr national phenome centre ( […]

library_books

Metabolomics with Nuclear Magnetic Resonance Spectroscopy in a Drosophila melanogaster Model of Surviving Sepsis

2016
PMCID: 5192453
PMID: 28009836
DOI: 10.3390/metabo6040047

[…] (pricked with an aseptic needle), and unmanipulated (positive control). we performed metabolic measurements seven days after sepsis. we then implemented metabolites detected in nmr spectra into the metexplore web server in order to identify the metabolic pathway alterations in sepsis surviving drosophila. our nmr metabolomic approach in a drosophila model of recovery from sepsis clearly […]

library_books

A Resource Allocation Trade Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum

2016
PLoS Pathog
PMCID: 5061431
PMID: 27732672
DOI: 10.1371/journal.ppat.1005939

[…] like blast through various databases and links to the bibliography for the blast hits, prediction of gene product localization, prediction of ec number. dead-end reactions were computed thanks to metexplore [] and the gap filling was performed by reassessment of pathway context through the previously listed tools and databases. transport reactions as well as assimilation pathways of various […]

library_books

A Combinatorial Algorithm for Microbial Consortia Synthetic Design

2016
Sci Rep
PMCID: 4931573
PMID: 27373593
DOI: 10.1038/srep29182

[…] also on the production of pdo. hence associating k. pneumoniae with a methanogen has been proposed to reduce such effect., all the genome-scale models (gems) used were extracted from kegg using metexplore. in both examples, cofactors and co-enzymes obtained from a list available in kegg were removed. the networks, constructed as explained previously, were filtered using a lossless […]

library_books

Insights on the virulence of swine respiratory tract mycoplasmas through genome scale metabolic modeling

2016
BMC Genomics
PMCID: 4866288
PMID: 27178561
DOI: 10.1186/s12864-016-2644-z

[…] caused by the swine lung mycoplasmas and may help to propose ways to prevent disease development in the future., all models from this work are available in additional file and online at the metexplore database (http://metexplore.toulouse.inra.fr/metexplore2/)., additional file 1 , additional file 2 , additional file 3 , additional file 4 , additional file 5 , […]


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MetExplore institution(s)
INRA, UMR1089, Xénobiotiques, Toulouse, France

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