MetFamily specifications

Information


Unique identifier OMICS_23634
Name MetFamily
Interface Web user interface
Restrictions to use None
Input data A metabolite profile.
Programming languages R
License GNU General Public License version 3.0
Computer skills Basic
Version 1.0
Stability Stable
Source code URL https://codeload.github.com/Treutler/MetFamily/zip/master
Maintained No

Maintainer


This tool is not available anymore.

Additional information


https://msbi.ipb-halle.de/MetFamily/session/46902b17e287b88d90678cfdb7dd7ea6/download/downloadDocUserGuide?w= https://github.com/Treutler/MetFamily

Publication for MetFamily

MetFamily citations

 (2)
library_books

Probing Protein Glycation by Chromatography and Mass Spectrometry: Analysis of Glycation Adducts

2017
Int J Mol Sci
PMCID: 5751160
PMID: 29182540
DOI: 10.3390/ijms18122557

[…] ducts and other derivatization agents seems to be promising, especially in combination with data analysis tools providing hierarchical clustering by characteristic class-specific fragment ions (e.g., MetFamily software, recently introduced by Balcke and co-workers []).Although the reagents, conventionally used in amino acid analysis might also produce such characteristic fragments (e.g., character […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] onal approach to produce hierarchical trees based on compound similarity to assist visualization of chemical overlap between molecular datasets and the extraction of structure–activity relationships. MetFamily [] groups metabolites into families based on an integrated analysis of MS1 abundances, with MS/MS facilitating further data interpretation. MetCirc [] is an R tool that is particularly usefu […]

MetFamily institution(s)
Leibniz Institute of Plant Biochemistry, Dept. of Cell and Metabolic Biology, Halle/Saale, Germany; Leibniz Institute of Plant Biochemistry, Dept. of Stress and Developmental Biology, Halle/Saale, Germany; Leibniz Institute of Plant Biochemistry, Dept. of Bioorganic Chemistry, Halle/Saale, Germany; RIKEN Center for Sustainable Resource Science, Yokohama, Japan

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