MetFusion protocols

View MetFusion computational protocol

MetFusion statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left In silico fragmentation chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

MetFusion specifications

Information


Unique identifier OMICS_02665
Name MetFusion
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Gerlich M. <>

Publication for MetFusion

MetFusion in pipeline

2016
PMCID: 4846091
PMID: 27116459
DOI: 10.1371/journal.pone.0154043

[…] was converted into mzml format using ms convert software []. data preprocessing and statistical analysis were performed with mzmine 2.10 and metaboanalyst 3.0 [,]. for structure identification with metfusion, the ms/ms peak list was used as input into metfusion and then the molecule structures and scores were returned in sd files []., the phb concentration in m. extorquens was determined […]


To access a full list of citations, you will need to upgrade to our premium service.

MetFusion in publications

 (6)
PMCID: 5804067
PMID: 29415712
DOI: 10.1186/s12906-018-2112-1

[…] tentatively identified by generating molecular formulas from masslynx v 4.1 based on their ifit value, and by comparison of ms/ms fragmentation pattern with that of matching compounds from metlin, metfusion, chemspider and massbank libraries. additionally, acquired accurate masses were compared with those of known compounds in compound databases. pure standards were used to confirm […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] []. csi: iokr outperforms other approaches in metabolite identification rate while considerably shortening running time; nevertheless, it is still not available as an implemented workflow. finally, metfusion [] is a java web tool that combines spectra database matching against massbank with the prediction-based annotation provided by metfrag., interpretation of omics data is usually complicated […]

PMCID: 5031787
PMID: 27713750
DOI: 10.3389/fpls.2016.01377

[…] the identification of n-containing molecules. following ms2 analysis, fragmentation patterns were queried against the massbank database and in silico verification was performed using metfrag and metfusion () routines. when available, authentic standards were used to confirm the annotation. in-source fragmentation products were sorted manually on the basis of ms2 data and elution time. […]

PMCID: 4846091
PMID: 27116459
DOI: 10.1371/journal.pone.0154043

[…] was converted into mzml format using ms convert software []. data preprocessing and statistical analysis were performed with mzmine 2.10 and metaboanalyst 3.0 [,]. for structure identification with metfusion, the ms/ms peak list was used as input into metfusion and then the molecule structures and scores were returned in sd files []., the phb concentration in m. extorquens was determined […]

PMCID: 3901272
PMID: 24958000
DOI: 10.3390/metabo3020440

[…] than the average rrp for molgen-ms of 0.273, indicating an above-average ranking success. the absolute rank was close to the ranks achieved by the other (internal) participants with metfrag (21) and metfusion (40) using compound databases, while no external participant submitted the correct answer and thus no casmi winner was declared for this challenge. the final rank was influenced […]


To access a full list of publications, you will need to upgrade to our premium service.

MetFusion institution(s)
Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Germany

MetFusion reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MetFusion