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MethMarker specifications

Information


Unique identifier OMICS_00636
Name MethMarker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for MethMarker

MethMarker citations

 (2)
library_books

Report on the 2nd Annual Infinium Humanmethylation450 Array Workshop

2013
Epigenetics
PMCID: 3891693
PMID: 23949542
DOI: 10.4161/epi.26073

[…] 450k analysis tool developed in his group, rnbeads (http://rnbeads.bioinf.mpi-inf.mpg.de). other tools mentioned, in which dr bock is a contributor, included epiexplorer, epigraph, biq analyzer, and methmarker. finally, dr bock presented godmc (genetics of dna methylation consortium) that facilitates genome-wide association studies of dna methylation. this consortium has been organized to bring […]

library_books

Aberrant DNA Methylation and Prostate Cancer

2011
Curr Genomics
PMCID: 3219844
PMID: 22547956
DOI: 10.2174/138920211797904061

[…] discrimination between methylated and unmethylated cytosine residues could be accomplished by designing the methylation-specific or bisulfite sequencing primers using software such as methprimer, methmarker, or methblast. methprimer detects cpg-specific parameters and islands and is essentially based on the primer3 algorithms for designing primers [,]. in addition, methmarker used […]


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MethMarker institution(s)
Max-Planck-Institut für Informatik, Saarbrücken, Germany

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