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MethMarker specifications

Information


Unique identifier OMICS_00636
Name MethMarker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for MethMarker

MethMarker citations

 (3)
library_books

Ambiguity and variability of database and software names in bioinformatics

2015
J Biomed Semantics
PMCID: 4485340
PMID: 26131352
DOI: 10.1186/s13326-015-0026-0

[…] requently matched within GO database identifiers (e.g., GO:0007089) because of inappropriate tokenisation). Some common false negatives (i.e., missed resource mentions) included Tabasco (PMC2242808), MethMarker (PMC2784320), xPedPhase and i Linker (both from PMC2691739). In each of these examples, the name missed (numerous times) was the resource being introduced in that paper. This shows that any […]

library_books

Report on the 2nd Annual Infinium Humanmethylation450 Array Workshop

2013
Epigenetics
PMCID: 3891693
PMID: 23949542
DOI: 10.4161/epi.26073

[…] 450k analysis tool developed in his group, RnBeads (http://rnbeads.bioinf.mpi-inf.mpg.de). Other tools mentioned, in which Dr Bock is a contributor, included EpiExplorer, EpiGRAPH, BiQ Analyzer, and MethMarker. Finally, Dr Bock presented GoDMC (Genetics of DNA Methylation Consortium) that facilitates genome-wide association studies of DNA methylation. This consortium has been organized to bring t […]

library_books

Aberrant DNA Methylation and Prostate Cancer

2011
Curr Genomics
PMCID: 3219844
PMID: 22547956
DOI: 10.2174/138920211797904061

[…] the length of the resulting fragments will be used to determine the methylation state and site-specificity []. The restriction enzyme catalogue of New England Biolab (NEB), NEB database REBASE [] and MethMarker can provide a comprehensive list of methylation-sensitive restriction enzymes to be used in setting up a COBRA experiment. […]

Citations

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MethMarker institution(s)
Max-Planck-Institut für Informatik, Saarbrücken, Germany

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