Tool stats & trends
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|Interface||Command line interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Mac OS, Windows|
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Publication for MethMarker
Ambiguity and variability of database and software names in bioinformatics
[…] requently matched within GO database identifiers (e.g., GO:0007089) because of inappropriate tokenisation). Some common false negatives (i.e., missed resource mentions) included Tabasco (PMC2242808), MethMarker (PMC2784320), xPedPhase and i Linker (both from PMC2691739). In each of these examples, the name missed (numerous times) was the resource being introduced in that paper. This shows that any […]
Report on the 2nd Annual Infinium Humanmethylation450 Array Workshop
[…] 450k analysis tool developed in his group, RnBeads (http://rnbeads.bioinf.mpi-inf.mpg.de). Other tools mentioned, in which Dr Bock is a contributor, included EpiExplorer, EpiGRAPH, BiQ Analyzer, and MethMarker. Finally, Dr Bock presented GoDMC (Genetics of DNA Methylation Consortium) that facilitates genome-wide association studies of DNA methylation. This consortium has been organized to bring t […]
Aberrant DNA Methylation and Prostate Cancer
[…] the length of the resulting fragments will be used to determine the methylation state and site-specificity . The restriction enzyme catalogue of New England Biolab (NEB), NEB database REBASE  and MethMarker can provide a comprehensive list of methylation-sensitive restriction enzymes to be used in setting up a COBRA experiment. […]
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