- Unique identifier:
- Command line interface
- Input data:
- Whole genome bisulfite short read sequencing data (WGBS), or Reduced Representation Bisulfite Sequencing (RRBS), or Bisulfite Amplicon Sequencing.
- BSD 3-clause “New” or “Revised” License
- Software type:
- Restrictions to use:
- Programming languages:
- Computer skills:
- Bismark and its dependencies (bwa).
- Nicholas Wong <>
- Bernard Pope <>
- Alexander Dobrovic <>
No open topic.
(Wong et al., 2016)
MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing.
PMID: 26911705 DOI: 10.1186/s12859-016-0950-8
(Wong et al., 2015)
Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat.
PMID: 26613017 DOI: 10.1186/s13742-015-0098-x
Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, VIC, Australia; Murdoch Childrens Research Institute, The Royal Children’s Hospital, Parkville, VIC, Australia; Department of Paediatrics, The University of Melbourne, Parkville, VIC, Australia. Victoria n Life Sciences Computation Initiative (VLSCI), The University of Melbourne, Parkville, VIC, Australia; Department of Computing and Information Systems, The University of Melbourne, Parkville, VIC, Australia; Department of Pathology, The University of Melbourne, Parkville, VIC, Australia; Centre for Personalised NanoMedicine, Australian Institute of Nanotechnology and Bioengineering, The University of Queensland, Brisbane, QLD, Australia; School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, QLD, Australia; Molecular Pathology Research and Development Laboratory, Department of Pathology, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia; BioInfoRx Inc., Madison, WI, USA; BioResearch Software Consultants, Battle Ground, WA, USA; Department of Animal, Plant and Soil Sciences, La Trobe University, Bundoora, VIC, Australia; School of Cancer Medicine, La Trobe University, Bundoora, VIC , Australia; Present Address: Pacific Edge Biotechnology Ltd, Dunedin, Otago, New Zealand
Supported, in part, by National Breast Cancer Foundation of Australia (NCBF) (grants CG-08-07, CG-10-04 and CG-12-07), the Cancer Council of Victoria, grants from the Victorian Cancer Agency, the Melbourne Melanoma Project funded by the Victorian Cancer Agency Translational Research program
and established through support of the Victor Smorgon Charitable Fund, and the Victorian Government Operational and Infrastructure Support Grant.
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