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MethPipe

A computational pipeline for analyzing bisulfite sequencing data (WGBS and RRBS). MethPipe is a pipeline for both low and high-level methylome analysis, and MethBase, an accompanying database of annotated methylomes from the public domain. Together these resources enable researchers to extract interesting features from methylomes and compare them with those identified in public methylomes in our database.

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MethPipe forum

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MethPipe classification

MethPipe specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
Output format:
BAM, tab-delimited text
Programming languages:
C++
Version:
3.3.1
Maintained:
Yes
Interface:
Command line interface
Input format:
FASTQ, BAM, SAM
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

MethPipe distribution

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MethPipe support

Documentation

Maintainer

  • Andrew Smith <>

Credits

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Publications

Institution(s)

Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA

Link to literature

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