Methyl-Analyzer specifications


Unique identifier OMICS_00617
Name Methyl-Analyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Aligned and paired-end reads to a reference genome
Input format Mates format (SOLiD platform), SAM
Output data Recognition sites, estimate methylation scores, DNA methylation profiles
Output format BED, Wiggle, Microarray formats
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Numpy, Pyfasta, Pysam
Maintained Yes



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  • person_outline Fatemeh G. Haghighi <>

Publication for Methyl-Analyzer

Methyl-Analyzer institution(s)
Department of Psychiatry, Columbia University, New York, NY, USA; New York State Psychiatric Institute, New York, NY, USA; Department of Neurology, Mount Sinai School of Medicine, New York, NY, USA
Methyl-Analyzer funding source(s)
National Institute of Health (NIH) (HG002915); National Institute of Mental Health (NIMH) (MH074118)

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