Methylation plotter specifications
|Interface||Web user interface|
|Restrictions to use||None|
|License||GNU General Public License version 2.0|
- person_outline Izaskun Mallo <>
Methylation plotter URLs?
#2 opened on 2017-06-20 by Feder Azo • 0 answers
Which address should I use to access methylation plotter http://maplab.cat/methylation_plotter http://maplab.imppc.org/methylation_plotter http://gattaca.imppc.org:3838/methylation_plotter/ ?
Publication for Methylation plotter
Methylation plotter in publications(5)
[…] in parallel, we used perl to create single specific files for every interrogated gene, which were then visualized using biq analyzer , quma , and bisma  to confirm data from bspat analysis. methylation plotter (http://gattaca.imppc.org:3838/methylation_plotter/)  was used to create fig. and additional file ., multiclass linear discriminant analysis and receiver operating […]
[…] average linkage clustering. no normalizations or transformations have been performed. heatmaps were generated with gene pattern software/heatmap viewer. methylation plots (, ) were generated with methylation plotter., sorted cell populations were lysed and rna was isolated using the rneasy mini kit (quiagen). synthesis of cdna was performed with superscript reverse transcriptase ii […]
[…] supports the local alignment and computational removal of potentially unconverted reads. the alignment profile can be visualized with tools such as the ucsc genome browser , wbsa , igv  and methylation plotter , which results in greater clarity at a single-base resolution across the genome.table 2 brat-bw bisulfite-treated reads analysis tool (burrows–wheeler transform), ucsc genome […]
[…] by the encode project consortium . geo accession numbers are listed in additional file . sodium bisulphite sequencing data and kruskal-wallis test of sodium bisulphite data were done with the methylation plotter web tool . supporting data containing the individual gene expression values are shown in additional file ., additional file 1: additional file 2: additional file 3: […]
[…] reverse sequencing primer (5’-caggaaacagctatgac). dna sequences were then subjected to analysis by bisulfite sequencing dna methylation analysis (bisma) using default parameters and displayed using methylation plotter., mh, em and mb generated the data. mh and dg performed the data analysis and constructed the figures. mh, dg and rg wrote the main manuscript text. all authors reviewed […]
Methylation plotter review
The last star would have been selected if it had been possible to choose to change the design of the plots (colors...).