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MethylExtract

A user friendly tool to: i) generate high quality, whole genome methylation maps and ii) detect sequence variation within the same sample preparation. The program is implemented into a single script and takes into account all major error sources. MethylExtract detects variation (SNVs) in a similar way to VarScan, a very sensitive method extensively used in SNV and genotype calling based on non-bisulfite-treated reads.

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MethylExtract classification

MethylExtract specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Version:
1.8.1
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

MethylExtract distribution

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No versioning.

MethylExtract support

Maintainer

  • Michael Hackenberg <>

Credits

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Publications

Institution(s)

Dpto de Genética, Facultad de Ciencias, Universidad de Granada, Granada, Spain; Lab de Bioinformática, Inst de Biotecnología, Centro de Investigación Biomédica, Granada, Spain

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