methyLiftover statistics

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Citations per year

Number of citations per year for the bioinformatics software tool methyLiftover
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Tool usage distribution map

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Associated diseases

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Popular tool citations

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methyLiftover specifications

Information


Unique identifier OMICS_11430
Name methyLiftover
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Brock Christensen

Publication for methyLiftover

methyLiftover citations

 (2)
library_books

Cell type deconvolution from DNA methylation: a review of recent applications

2017
Hum Mol Genet
PMCID: 5886462
PMID: 28977446
DOI: 10.1093/hmg/ddx275

[…] ata analysis and data sharing. For those studies using different technologies, such as whole-genome (WGBS) and reduced representation bisulfite sequencing (RRBS), cross platform mapping methods, e.g. methyLiftover () may provide additional opportunities for cell-type deconvolution applications.Cell-type deconvolution is based on well-established definitions of cell types that are used in gold stan […]

library_books

An evaluation of processing methods for HumanMethylation450 BeadChip data

2016
BMC Genomics
PMCID: 4918139
PMID: 27334613
DOI: 10.1186/s12864-016-2819-7

[…] Atlas data (KIRC, COAD) are publicly available from the TCGA data portal (https://tcga-data.nci.nih.gov/tcga/). The TCGA LUAD WGBS data were obtained from https://github.com/Christensen-Lab-Dartmouth/methyLiftover. […]


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methyLiftover institution(s)
Department of Epidemiology, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA; Department of Biostatistics, Oregon State University College of Public Health and Human Sciences, Corvallis, OR, USA; Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA; Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA
methyLiftover funding source(s)
This work has been supported by P20GM104416/8189 (BCC), R01DE022772 (BCC), R01MH094609 (EAH) and R01ES024991 (EAH).

methyLiftover reviews

 (2)
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Kevin Johnson's avatar image No country

Kevin Johnson

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Desktop
Easy to use and detailed documentation. Maintainer responded promptly to inquiries.
David Chen's avatar image

David Chen

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Desktop
methyLiftover operates on multiple types of genome-scale DNA methylation data and works compatibly with other R/Bioconductor packages. Highly recommend!