methyLiftover specifications

Information


Unique identifier OMICS_11430
Name methyLiftover
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Brock Christensen <>

Publication for methyLiftover

methyLiftover in publication

PMCID: 4918139
PMID: 27334613
DOI: 10.1186/s12864-016-2819-7

[…] data (kirc, coad) are publicly available from the tcga data portal (https://tcga-data.nci.nih.gov/tcga/). the tcga luad wgbs data were obtained from https://github.com/christensen-lab-dartmouth/methyliftover., jl performed the analysis and kds conceived the study. the study was designed and manuscript written by jl and kds. both authors read and approved the final manuscript., j. l […]


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methyLiftover institution(s)
Department of Epidemiology, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA; Department of Biostatistics, Oregon State University College of Public Health and Human Sciences, Corvallis, OR, USA; Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA; Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA
methyLiftover funding source(s)
This work has been supported by P20GM104416/8189 (BCC), R01DE022772 (BCC), R01MH094609 (EAH) and R01ES024991 (EAH).

methyLiftover reviews

 (2)
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Kevin Johnson

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Easy to use and detailed documentation. Maintainer responded promptly to inquiries.
David Chen's avatar image

David Chen

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methyLiftover operates on multiple types of genome-scale DNA methylation data and works compatibly with other R/Bioconductor packages. Highly recommend!