Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

methylKit

An R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. methylKit is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal with base-pair resolution data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bisulfite sequencing data if proper input format is provided.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

methylKit forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

methylKit classification

methylKit specifications

Software type:
Package/Module
Restrictions to use:
None
Output format:
Bedgraph, tab-delimited text, images
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Input format:
Tab-delimited text
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable

methylKit distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

methylKit support

Documentation

Maintainer

  • Christopher E. Mason <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY USA; Department of Public Health, Weill Cornell Medical College, New York, NY, USA; Department of Medicine, Division of Hematology/Oncology, Weill Cornell Medical College, New York, NY, USA; Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Department of Pharmacology, Weill Cornell Medical College, New York, NY, USA

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.