Methylmapper specifications

Information


Unique identifier OMICS_09222
Name Methylmapper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Information


Unique identifier OMICS_09222
Name Methylmapper
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Methylmapper citations

 (2)
library_books

Optimized design and data analysis of tag based cytosine methylation assays

2010
Genome Biol
PMCID: 2884539
PMID: 20359321
DOI: 10.1186/gb-2010-11-4-r36

[…] nzyme-based assays used with microarrays have also proven to be reasonably quantitative, whether based on methylation-sensitive (for example, the HELP assay []) or methylation-dependent (for example, MethylMapper []) enzymes. A promising new MPS-based assay is reduced representation bisulfite sequencing (RRBS), which is designed to study the CG-dense regions defined by short MspI fragments, and pr […]

library_books

Identification of Novel High Frequency DNA Methylation Changes in Breast Cancer

2007
PLoS One
PMCID: 2117343
PMID: 18091988
DOI: 10.1371/journal.pone.0001314

[…] uencing was performed by the Washington University Genome Sequencing Center. To control for bisulphite conversion efficiency, incompletely converted molecules were identified and eliminated using the MethylMapper BisY control . This excluded approximately 2% of the eligible reads. The next level of quality control assessed each read by ensuring that it exhibited a single-hit with a long high-scori […]

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