methylPipe protocols

methylPipe specifications

Information


Unique identifier OMICS_06799
Name methylPipe
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for methylPipe

methylPipe IN pipeline

2016
PMCID: 4926291
PMID: 27358654
DOI: 10.1186/s13072-016-0075-3

[…] that enables a correction for multiple testing., schmitz et al. performed a large-scale wgbs analysis in which dmrs from many arabidopsis methylomes were detected [116]. they used the r package methylpipe to scan the genome with 100-bp windows [114], and the methylation level of the sites within a window was compared across all samples using a kruskal–wallis test. the p values […]

methylPipe institution(s)
Center for Genomic Science of IITASEMM, Istituto Italiano di Tecnologia (IIT), Milano, Italy; Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA, Australia; Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA; Department of Experimental Oncology, European Institute of Oncology (IEO), Milano, Italy; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA, USA

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