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MethylQuant specifications

Information


Unique identifier OMICS_23681
Name MethylQuant
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

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Maintainer


  • person_outline Gene Hart-Smith <>

Publication for MethylQuant

MethylQuant in publications

 (3)
PMCID: 4396391
PMID: 25849564
DOI: 10.1038/ncomms7758

[…] gluc. fdr was set to 5% at the peptide level and results filtered for arginine-methylated peptides. raw data files were searched for matching methyl silac pairs using a programme developed in-house (methylquant, programme available on request). peptides were retained if they satisfied the following criteria: a matching methyl silac pair at a 1:1 intensity ratio, mass error <9.3 p.p.m., ip […]

PMCID: 1363782
PMID: 16473842
DOI: 10.1093/nar/gnj022

[…] the bisulfite induced sequence changes to specifically amplify either methylated or unmethylated alleles. quantitative variations of this technique, such as methylight (), heavymethyl () and methylquant (), employ methylation-specific oligonucleotides in conjunction with taqman probes or sybr green based real-time pcr amplification to quantitate alleles with a specific pattern […]

PMCID: 1145194
PMID: 15944447
DOI: 10.1093/nar/gni092

[…] left unmodified by bisulfite treatment; methylight () detects methylation in 1–5 cpg sites covered by primers and probe; qama () measures methylation in a 14 bp fragment covered by a taqman probe; methylquant () assays methylation of a single cytosine in bisulfite-modified dna. it appears that bisulfite sequencing () is the only technique that provides the methylation profile of each and every […]

MethylQuant institution(s)
NSW Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia; Centre for Immunology and Infection, University of York, Heslington, York, UK
MethylQuant funding source(s)
Supported by the Australian Research Council (ARC), the UNSW School of Biotechnology and Biomolecular Sciences, and an Australian Postgraduate Award.

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