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methylSpectrum specifications


Unique identifier OMICS_13681
Name methylSpectrum
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No




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Publication for methylSpectrum

methylSpectrum citation


Association of DNA methylation with age, gender, and smoking in an Arab population

Clin Epigenetics
PMCID: 4320840
PMID: 25663950
DOI: 10.1186/s13148-014-0040-6

[…] from whole-genome methylation data. the fraction of six cell types, namely monocytes, granulocytes, nk cells, b cells, cd8+-t cells, and cd4+-t cells, were determined for each subject using the methylspectrum software. the resulting distribution plots of the white blood cell coefficients for our dataset are presented in additional file : figure s3., in order to capture any remaining […]

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methylSpectrum institution(s)
College of Public Health and Human Sciences, Oregon State University, Corvallis, OR, USA; Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, USA; Section of Biostatistics and Epidemiology, Dartmouth Medical School, Hanover, NH, USA; Department of Epidemiology, University of Minnesota, Minneapolis, MN, USA; Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA; Department of Epidemiology, Brown University, Providence, RI, USA
methylSpectrum funding source(s)
This work was supported by the National Institute of Health (grants n°CA100679, CA126939, CA121147 and CA078609).

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