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A package that provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An ``intelligent'' import function, methylumiR can read the Illumina text files and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from HumanMethylation27 and HumanMethylation450 microarrays. Normalization, background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.

User report

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Methylumi forum

No open topic.

Methylumi versioning

No versioning.

Methylumi classification

Methylumi specifications

Software type:
Package
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
R
Computer skills:
Advanced

Methylumi support

Documentation

Credits

Publications

Institution(s)

Department of Preventive Medicine, USC Keck School of Medicine of USC, Los Angeles, CA, USA

Link to literature

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