MethyQA statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool MethyQA

Tool usage distribution map

This map represents all the scientific publications referring to MethyQA per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Quality control Read alignment Methylation scoring chevron_right
Want to access the full stats & trends on this tool?


MethyQA specifications


Unique identifier OMICS_04218
Name MethyQA
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format Tab-delimited text
Operating system Unix/Linux
Programming languages Perl, Python, R
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Shuying Sun

Publication for MethyQA

MethyQA citations


HMPL: A Pipeline for Identifying Hemimethylation Patterns by Comparing Two Samples

Cancer Inform
PMCID: 4530977
PMID: 26308520
DOI: 10.4137/CIN.S17286

[…] cing data. If users find some serious sequencing quality issues in their data, we recommend that they check data more thoroughly using other available software packages, such as SAAP-RRBS, BSeQC, and MethyQA, before they interpret their HMPL results. […]


Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis

PMCID: 4790440
PMID: 26366945
DOI: 10.2217/epi.15.21
call_split See protocol

[…] methylation occurs), which is generally greater than 99.5%. These QC steps are integrated as part of analytical pipeline of SAAP-RRBS (or SAAP-BS) []. Specialized QC tools are also available such as MethyQA and BSeQC [,].Additional QC is necessary before jumping into correlative analysis with phenotypical data. CpGs with low coverage (<10× for example) should be excluded. After multiple samples a […]

Want to access the full list of citations?
MethyQA institution(s)
Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, USA; Department of Mathematics, Texas State University, San Marcos, TX, USA; Department of Electrical Engineering and Computer Sciences, Case Western Reserve University, Cleveland, OH, USA

MethyQA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MethyQA