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MetNetDB specifications


Unique identifier OMICS_02721
Name MetNetDB
Alternative name MetNet database
Restrictions to use None
Maintained Yes


  • Plants and Fungi
    • Arabidopsis thaliana

Publication for MetNet database

MetNetDB citations


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] Compound Feature Extraction and Annotation; MET-COFEI: Metabolite Compound Feature Extraction and Identification; MET-IDEA: Metabolomics Ion-Based Data Extraction Algorithm; METLIN: Metabolite Link; MetNetDB: Metabolic Network Exchange Database; MFSearcher: Molecular Formula Searcher; MIA: Mass Isotopolome Analyzer; MID: mass isotopomer distributions; MINE: Metabolic In Silico Network Expansion D […]


A systems biology approach toward understanding seed composition in soybean

BMC Genomics
PMCID: 4331812
PMID: 25708381
DOI: 10.1186/1471-2164-16-S3-S9

[…] MetNet systems biology tool suite,[,] for plant omics, and Plant/Eukaryotic and Microbial Metabolomics Systems Resource (PMR:[], were used for data deposition […]


MetNet Online: a novel integrated resource for plant systems biology

BMC Bioinformatics
PMCID: 3483157
PMID: 23066841
DOI: 10.1186/1471-2105-13-267

[…] ently contains information about three plant species (Arabidopsis, Soybean and Grapevine). In the future we plan to also incorporate Saccharomyces cerevisiae (for model comparison) and Hypericum spp. MetNetDB is the underlying database and draws the majority of its information from external databases (Table – also available on our website). In addition to the retrieved information, a number of si […]


MetNetAPI: A flexible method to access and manipulate biological network data from MetNet

BMC Res Notes
PMCID: 2998519
PMID: 21083943
DOI: 10.1186/1756-0500-3-312

[…] [] is based on the Lisp programming language and interfaces with local MetaCyc-derived databases, while MetNetAPI offers broader programming language support and always connects to the remote "live" MetNetDB database. BioMart [] is a generic biological repository, and configuring it to support complex network data takes a long time. Its general-purpose nature also makes it slow to run complex que […]


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MetNetDB institution(s)
Department of Electrical and Computer Engineering, Iowa State University, Ames, IA, USA

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